RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TMOD4Q9NZQ9 345 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 PLEKHB1Q9UF11 243 aaPredicted RBP4.43□□□□□ -1.7
VPS50-219ENST00000495039 GLUD1P00367 558 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 LCATP04180 440 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 ANXA2P07355 339 aaKnown RBP4.42□□□□□ -1.7
VPS50-219ENST00000495039 FCGR1AP12314 374 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 KRTAP5-9P26371 169 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 GSTM5P46439 218 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 GLUD2P49448 558 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 PDLIM4P50479 330 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 ABATP80404 500 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 DNTTIP2Q5QJE6 756 aaKnown RBP4.42□□□□□ -1.7
VPS50-219ENST00000495039 CCDC144NLQ6NUI1 221 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.42□□□□□ -1.7
VPS50-219ENST00000495039 SLC16A12Q6ZSM3 486 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 ARMC9Q7Z3E5 817 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 KRT28Q7Z3Y7 464 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 GABPB2Q8TAK5 448 aaPredicted RBP4.42□□□□□ -1.7
VPS50-219ENST00000495039 EIF3CQ99613 913 aaKnown RBP4.42□□□□□ -1.7
VPS50-219ENST00000495039 AS3MTQ9HBK9 375 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 NOB1Q9ULX3 412 aaKnown RBP4.42□□□□□ -1.7
VPS50-219ENST00000495039 B3GNT3Q9Y2A9 372 aa4.42□□□□□ -1.7
VPS50-219ENST00000495039 SERINC4A6NH21 518 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 SLC16A5O15375 505 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 KCNQ3O43525 872 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 PPP6R2O75170 966 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 COQ9O75208 318 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 SCGB1D2O95969 90 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 ALADP13716 330 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 CLCN5P51795 746 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 SEC61A1P61619 476 aaKnown RBP4.41□□□□□ -1.7
VPS50-219ENST00000495039 POU5F1BQ06416 359 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 CBFBQ13951 182 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 MRGPRG-AS1Q2M3A8 158 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 ZNF672Q499Z4 452 aaPredicted RBP4.41□□□□□ -1.7
VPS50-219ENST00000495039 FNBP1LQ5T0N5 605 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 FAXCQ5TGI0 409 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 CXorf57Q6NSI4 855 aaKnown RBP4.41□□□□□ -1.7
VPS50-219ENST00000495039 KDELC2Q7Z4H8 507 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 PAQR4Q8N4S7 273 aaPredicted RBP4.41□□□□□ -1.7
VPS50-219ENST00000495039 WBP2Q969T9 261 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 INPP4AQ96PE3 977 aaPredicted RBP4.41□□□□□ -1.7
VPS50-219ENST00000495039 ZNF347Q96SE7 839 aa4.41□□□□□ -1.7
VPS50-219ENST00000495039 PLSCR5A0PG75 271 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 GOLIM4O00461 696 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 TSPAN6O43657 245 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 CNTN5O94779 1100 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 TGM2P21980 687 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 SLC5A2P31639 672 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 TRAF2Q12933 501 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 DARS2Q6PI48 645 aaKnown RBP4.4□□□□□ -1.71
VPS50-219ENST00000495039 FMNL3Q8IVF7 1028 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 RTP4Q96DX8 246 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 STRBPQ96SI9 672 aaKnown RBP4.4□□□□□ -1.71
VPS50-219ENST00000495039 MAGEH1Q9H213 219 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 RETREG1Q9H6L5 497 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 CATSPERBQ9H7T0 1116 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 DTX4Q9Y2E6 619 aa4.4□□□□□ -1.71
VPS50-219ENST00000495039 SRRM3A6NNA2 597 aaPredicted RBP4.39□□□□□ -1.71
VPS50-219ENST00000495039 A6NNZ2 444 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 ZSCAN9O15535 394 aaPredicted RBP4.39□□□□□ -1.71
VPS50-219ENST00000495039 THAP12O43422 761 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 PARNO95453 639 aaKnown RBP4.39□□□□□ -1.71
VPS50-219ENST00000495039 ZBTB11O95625 1053 aaPredicted RBP4.39□□□□□ -1.71
VPS50-219ENST00000495039 KRTAP10-12P60413 245 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 EEF1A2Q05639 463 aaKnown RBP4.39□□□□□ -1.71
VPS50-219ENST00000495039 PMPCAQ10713 525 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 TRAF1Q13077 416 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 FAM102BQ5T8I3 360 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 WBP2NLQ6ICG8 309 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 MRNIPQ6NTE8 343 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 CCDC149Q6ZUS6 474 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 H1FNTQ75WM6 255 aaPredicted RBP4.39□□□□□ -1.71
VPS50-219ENST00000495039 TCEAL8Q8IYN2 117 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 MYO1HQ8N1T3 1032 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 SRFBP1Q8NEF9 429 aaKnown RBP4.39□□□□□ -1.71
VPS50-219ENST00000495039 ADAMTS14Q8WXS8 1223 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 KAT2AQ92830 837 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 TSR2Q969E8 191 aaKnown RBP4.39□□□□□ -1.71
VPS50-219ENST00000495039 C1QTNF4Q9BXJ3 329 aa4.39□□□□□ -1.71
VPS50-219ENST00000495039 A0A087WZ62 844 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 GOLGA6CA6NDK9 693 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 GOLGA6BA6NDN3 693 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 KRT36O76013 467 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 GOLGA6DP0CG33 693 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 RPL17P18621 184 aaKnown RBP4.38□□□□□ -1.71
VPS50-219ENST00000495039 MST1P26927 711 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 RFX5P48382 616 aaPredicted RBP4.38□□□□□ -1.71
VPS50-219ENST00000495039 DLX5P56178 289 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 ZP1P60852 638 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 P3H1Q32P28 736 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 MINDY4Q4G0A6 757 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 ALG10Q5BKT4 473 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 ALG10BQ5I7T1 473 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 DCAF12L2Q5VW00 463 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 NXNQ6DKJ4 435 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 C8orf82Q6P1X6 216 aaPredicted RBP4.38□□□□□ -1.71
VPS50-219ENST00000495039 CRTC1Q6UUV9 634 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 PIK3AP1Q6ZUJ8 805 aa4.38□□□□□ -1.71
VPS50-219ENST00000495039 WDR75Q8IWA0 830 aaKnown RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms