RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TMEM40Q8WWA1 233 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 TXNDC16Q9P2K2 825 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 SLC7A8Q9UHI5 535 aa18.43■□□□□ 0.54
VIM-206ENST00000487938 FAM72CH0Y354 149 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 XPO1O14980 1071 aaKnown RBP18.42■□□□□ 0.54
VIM-206ENST00000487938 HUS1O60921 280 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 CIB2O75838 187 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 YY1P25490 414 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 ARRB2P32121 409 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 GLUD2P49448 558 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 TAF6P49848 677 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 SLC25A3Q00325 362 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 KLC1Q07866 573 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 PDK1Q15118 436 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 DUSP28Q4G0W2 176 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 STXBP5Q5T5C0 1151 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 VWA5B1Q5TIE3 1220 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 FAM72AQ5TYM5 149 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 FAM72DQ6L9T8 149 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 TMEM154Q6P9G4 183 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 NET1Q7Z628 596 aaPredicted RBP18.42■□□□□ 0.54
VIM-206ENST00000487938 FAM72BQ86X60 149 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 RNF169Q8NCN4 708 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 B3GALNT2Q8NCR0 500 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 DNAJB3Q8WWF6 145 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 AZIN2Q96A70 460 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 SHCBP1LQ9BZQ2 653 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 GDAP2Q9NXN4 497 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 PDHXO00330 501 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 EEF2KO00418 725 aaKnown RBP18.42■□□□□ 0.54
VIM-206ENST00000487938 PROCP04070 461 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 CYP2C9P11712 490 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 DARSP14868 501 aaKnown RBP18.42■□□□□ 0.54
VIM-206ENST00000487938 EPHX2P34913 555 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 HIC1Q14526 733 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 DPY19L2Q6NUT2 758 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 MAVSQ7Z434 540 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 FAM136AQ96C01 138 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 SYT15Q9BQS2 421 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 DUSP16Q9BY84 665 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 EIF2B3Q9NR50 452 aaKnown RBP18.42■□□□□ 0.54
VIM-206ENST00000487938 KRT82Q9NSB4 513 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 PIGVQ9NUD9 493 aa18.42■□□□□ 0.54
VIM-206ENST00000487938 APOBEC2Q9Y235 224 aaKnown RBP18.42■□□□□ 0.54
VIM-206ENST00000487938 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.41■□□□□ 0.54
VIM-206ENST00000487938 DYNC1LI2O43237 492 aaPredicted RBP18.41■□□□□ 0.54
VIM-206ENST00000487938 POLBP06746 335 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 SMIM10L2AP0DMW4 78 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 SMIM10L2BP0DMW5 78 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 NOS2P35228 1153 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 ABCG1P45844 678 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 DEUP1Q05D60 604 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 TNS4Q8IZW8 715 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 PPFIBP2Q8ND30 876 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 SLC10A4Q96EP9 437 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 TNIP3Q96KP6 325 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 ZNF560Q96MR9 790 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 SORT1Q99523 831 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 SLC24A3Q9HC58 644 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 KLHL8Q9P2G9 620 aaPredicted RBP18.41■□□□□ 0.54
VIM-206ENST00000487938 RCOR3Q9P2K3 495 aaPredicted RBP18.41■□□□□ 0.54
VIM-206ENST00000487938 ZNF212Q9UDV6 495 aa18.41■□□□□ 0.54
VIM-206ENST00000487938 RRN3P2A6NIE6 340 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 DAB1O75553 588 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 SERPINE1P05121 402 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 LILRA4P59901 499 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 ITGA9Q13797 1035 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 DNAL1Q4LDG9 190 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 PRAMEF19Q5SWL8 479 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 C1orf146Q5VVC0 180 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 PAQR9Q6ZVX9 377 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 CCNJLQ8IV13 435 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 KBTBD2Q8IY47 623 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 ARRDC4Q8NCT1 418 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 CERS2Q96G23 380 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 NPY6RQ99463 290 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 AGAP2Q99490 1192 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 TTC1Q99614 292 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 FERMT1Q9BQL6 677 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 MED10Q9BTT4 135 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 LRRC4Q9HBW1 653 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 ANLNQ9NQW6 1124 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 CACNG4Q9UBN1 327 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 MAP3K7O43318 606 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 BAG2O95816 211 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 AMHP03971 560 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 CPOXP36551 454 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 IDH3AP50213 366 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 MAP3K7CLP57077 242 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 TBCCQ15814 346 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 C6orf163Q5TEZ5 329 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 PLD6Q8N2A8 252 aaKnown RBP18.4■□□□□ 0.54
VIM-206ENST00000487938 DCLK2Q8N568 766 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 PPP4R1Q8TF05 950 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 HNRNPABQ99729 332 aaKnown RBP18.4■□□□□ 0.54
VIM-206ENST00000487938 YIPF3Q9GZM5 350 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 COPG2Q9UBF2 871 aa18.4■□□□□ 0.54
VIM-206ENST00000487938 A0A088AWK7 358 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 ARHGAP42A6NI28 874 aa18.39■□□□□ 0.54
VIM-206ENST00000487938 F8W8V4 182 aa18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms