RNA–Protein interactions for RNA: ENST00000485024.1

VPS8-223, Transcript of VPS8, CORVET complex subunit, human

TSL 2

Gene VPS8, Length 477 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-223	ENST00000485024	TPSD1	Q9BZJ3	242 aa		4.37	□□□□□ -1.71
VPS8-223	ENST00000485024	IRAK4	Q9NWZ3	460 aa		4.37	□□□□□ -1.71
VPS8-223	ENST00000485024	IFT80	Q9P2H3	777 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS8-223	ENST00000485024	LPAR3	Q9UBY5	353 aa		4.37	□□□□□ -1.71
VPS8-223	ENST00000485024	SERGEF	Q9UGK8	458 aa		4.37	□□□□□ -1.71
VPS8-223	ENST00000485024	NPAT	Q14207	1427 aa		4.37	□□□□□ -1.71
VPS8-223	ENST00000485024	UACA	Q9BZF9	1416 aa		4.37	□□□□□ -1.71
VPS8-223	ENST00000485024	CAMTA1	Q9Y6Y1	1673 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	LINC00473	A8K010	186 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024		E7EVH7	732 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	EYA2	O00167	538 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	MPPED1	O15442	326 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	BAIAP3	O94812	1187 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	TOMM70	O94826	608 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	POLB	P06746	335 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CSF1R	P07333	972 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	IFIT1	P09914	478 aa	Known RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CKMT1A	P12532	417 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	TNNT1	P13805	278 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	GYS1	P13807	737 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	TNFAIP3	P21580	790 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	MMP8	P22894	467 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CNTF	P26441	200 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CLNS1A	P54105	237 aa	Known RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	PNLIPRP1	P54315	467 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	NXPH1	P58417	271 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	TIRAP	P58753	221 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	MPP1	Q00013	466 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CHRND	Q07001	517 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CBFB	Q13951	182 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	SMAD1	Q15797	465 aa	Known RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	NBPF8	Q3BBV2	869 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	PTCHD3	Q3KNS1	767 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CD300E	Q496F6	205 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	VWA1	Q6PCB0	445 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	DTX2	Q86UW9	622 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	TICAM2	Q86XR7	235 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	SUGP1	Q8IWZ8	645 aa	Known RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	B3GALNT2	Q8NCR0	500 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CEP70	Q8NHQ1	597 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	SCAMP5	Q8TAC9	235 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	NOC3L	Q8WTT2	800 aa	Known RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	HMGB4	Q8WW32	186 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	FAM122A	Q96E09	287 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	FAR2	Q96K12	515 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	PAAF1	Q9BRP4	392 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	TMX4	Q9H1E5	349 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	VPS16	Q9H269	839 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	GLOD4	Q9HC38	313 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	SERTAD3	Q9UJW9	196 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	SUFU	Q9UMX1	484 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	DAPP1	Q9UN19	280 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	PROCR	Q9UNN8	238 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	CNTN6	Q9UQ52	1028 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	SH2B3	Q9UQQ2	575 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	UBE2J1	Q9Y385	318 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	TCF20	Q9UGU0	1960 aa	Known RBP	4.36	□□□□□ -1.71
VPS8-223	ENST00000485024	FHAD1	B1AJZ9	1412 aa		4.36	□□□□□ -1.71
VPS8-223	ENST00000485024		A6NLC8	198 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024		A8MVJ9	347 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024		B9A039	149 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024		F5H0A9	414 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	SLC16A3	O15427	465 aa	Known RBP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	HNRNPR	O43390	633 aa	Known RBP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	WDR47	O94967	919 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	NXPH3	O95157	252 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	DDX58	O95786	925 aa	Known RBP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	CNP	P09543	421 aa	Known RBP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	DLD	P09622	509 aa	Known RBP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	TMEM225B	P0DP42	221 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	HGF	P14210	728 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	CERS1	P27544	350 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	RXRG	P48443	463 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	RBM5	P52756	815 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	MC2R	Q01718	297 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	GRM4	Q14833	912 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	ACOX1	Q15067	660 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	RABEP1	Q15276	862 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	P3H1	Q32P28	736 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	TMEM63B	Q5T3F8	832 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	DEPDC1	Q5TB30	811 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	DGAT2L7P	Q6IED9	249 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	MZT2B	Q6NZ67	158 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	CLEC9A	Q6UXN8	241 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	BBS12	Q6ZW61	710 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	RASAL3	Q86YV0	1011 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	TMEM171	Q8WVE6	324 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	ALG8	Q9BVK2	526 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	ACTRT3	Q9BYD9	372 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	AMBRA1	Q9C0C7	1298 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	SMC4	Q9NTJ3	1288 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	FBXO28	Q9NVF7	368 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	ST3GAL5	Q9UNP4	418 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	DRG1	Q9Y295	367 aa	Known RBP	4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	SSX2IP	Q9Y2D8	614 aa		4.35	□□□□□ -1.71
VPS8-223	ENST00000485024	SLC27A6	Q9Y2P4	619 aa		4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms