RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 RPL10AP62906 217 aaKnown RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 DUSP4Q13115 394 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 CAMK1Q14012 370 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 PIGHQ14442 188 aaPredicted RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 SMC1AQ14683 1233 aaKnown RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 COL19A1Q14993 1142 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 DDR2Q16832 855 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 MGAT5BQ3V5L5 792 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 CCDC14Q49A88 953 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 EFHC1Q5JVL4 640 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 DNTTIP2Q5QJE6 756 aaKnown RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 OTUD1Q5VV17 481 aaPredicted RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 PLPP4Q5VZY2 271 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 CDPF1Q6NVV7 123 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 PEX26Q7Z412 305 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 SULF2Q8IWU5 870 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 TCEAL8Q8IYN2 117 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 TDHQ8IZJ6 230 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 SCAMP5Q8TAC9 235 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 ZNF461Q8TAF7 563 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 GRIN3AQ8TCU5 1115 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 POF1BQ8WVV4 589 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 RXFP2Q8WXD0 754 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 NDRG1Q92597 394 aaKnown RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 KRT35Q92764 455 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 FAM149B1Q96BN6 582 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 HES6Q96HZ4 224 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 CEP295NLQ96MC4 621 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 CNPY3Q9BT09 278 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 DDX23Q9BUQ8 820 aaKnown RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 TTLL2Q9BWV7 592 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 NKX2-4Q9H2Z4 354 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 PRO3102Q9H379 93 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 ENTPD7Q9NQZ7 604 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 IL37Q9NZH6 218 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 STOML1Q9UBI4 398 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 FAM8A1Q9UBU6 413 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 MSRAQ9UJ68 235 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 FBXW11Q9UKB1 542 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 AMFRQ9UKV5 643 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 SNX12Q9UMY4 172 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 PACSIN2Q9UNF0 486 aaPredicted RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 SCML2Q9UQR0 700 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 ALG6Q9Y672 507 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 OBSL1O75147 1896 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 SLC38A8A6NNN8 435 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 HIDE1A8MVS5 230 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 MIF4GDA9UHW6 222 aaKnown RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 H3BNC9 293 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 TGM5O43548 720 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 PSTPIP1O43586 416 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 LRCH4O75427 683 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 CSPG5O95196 566 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 RTN3O95197 1032 aaPredicted RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 CXCL14O95715 111 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 FYNP06241 537 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 GSTP1P09211 210 aaKnown RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 TCF4P15884 667 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 PDGFRAP16234 1089 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 TFE3P19532 575 aaPredicted RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 SDC4P31431 198 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 CA8P35219 290 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 MATKP42679 507 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 TUFMP49411 452 aaKnown RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 DNA2P51530 1060 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 TAS2R40P59535 323 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 RNASE9P60153 205 aaKnown RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 YWHAZP63104 245 aaKnown RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 SLC25A11Q02978 314 aaKnown RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 IFRD2Q12894 506 aaPredicted RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 ACAP1Q15027 740 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 RPS6KA1Q15418 735 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 C15orf59Q2T9L4 293 aaPredicted RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 DCAF12L1Q5VU92 463 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 DAB2IPQ5VWQ8 1189 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 LILRA6Q6PI73 481 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 BEND4Q6ZU67 534 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 DENND5BQ6ZUT9 1274 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 CYP4V2Q6ZWL3 525 aaPredicted RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 BEND5Q7L4P6 421 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 BNIPLQ7Z465 357 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 SCD5Q86SK9 330 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 DEFB106AQ8N104 65 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 NUP93Q8N1F7 819 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 ARFGAP1Q8N6T3 406 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 MRPL43Q8N983 215 aaKnown RBP6.93□□□□□ -1.3
USP48-208ENST00000479177 GDPD5Q8WTR4 605 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 FAM172AQ8WUF8 416 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 UBE2Q2Q8WVN8 375 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 ALG3Q92685 438 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 FBXO32Q969P5 355 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 NT5C3BQ969T7 300 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 CFAP57Q96MR6 1250 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 KLHL5Q96PQ7 755 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 TRIM62Q9BVG3 475 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 EMILIN2Q9BXX0 1053 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 FBXO44Q9H4M3 255 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 L2HGDHQ9H9P8 463 aa6.93□□□□□ -1.3
USP48-208ENST00000479177 CYP4F11Q9HBI6 524 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms