RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 NUCKS1Q9H1E3 243 aaKnown RBP12.44□□□□□ -0.42
HDAC6-219ENST00000476625 LRRC4Q9HBW1 653 aa12.44□□□□□ -0.42
HDAC6-219ENST00000476625 SGK2Q9HBY8 427 aa12.44□□□□□ -0.42
HDAC6-219ENST00000476625 RAB20Q9NX57 234 aa12.44□□□□□ -0.42
HDAC6-219ENST00000476625 SLCO3A1Q9UIG8 710 aa12.44□□□□□ -0.42
HDAC6-219ENST00000476625 HBS1LQ9Y450 684 aaKnown RBP12.44□□□□□ -0.42
HDAC6-219ENST00000476625 AK5Q9Y6K8 562 aa12.44□□□□□ -0.42
HDAC6-219ENST00000476625 KNL1Q8NG31 2342 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 TDRD6O60522 2096 aaKnown RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 MAPK13O15264 365 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 PAPSS1O43252 624 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 IGLV3-27P01718 113 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 C7P10643 843 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 TRIM21P19474 475 aaKnown RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 ABCB4P21439 1286 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 EPHA8P29322 1005 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 MAT2AP31153 395 aaKnown RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 RACK1P63244 317 aaKnown RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 CCDC173Q0VFZ6 552 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 DPYDQ12882 1025 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 ADAM9Q13443 819 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 POM121L1PQ3SYA9 428 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 PMF1Q6P1K2 205 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 FBXL19Q6PCT2 694 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 KANSL1Q7Z3B3 1105 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 MFN1Q8IWA4 741 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 APCDD1Q8J025 514 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 STK40Q8N2I9 435 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 UBR7Q8N806 425 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 KAT5Q92993 513 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 COL26A1Q96A83 441 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 NXPE2Q96DL1 559 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 NAF1Q96HR8 494 aaKnown RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 RPL10LQ96L21 214 aaKnown RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 IPO9Q96P70 1041 aaKnown RBP12.43□□□□□ -0.42
HDAC6-219ENST00000476625 FAM129BQ96TA1 746 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 UBXN6Q9BZV1 441 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 GOLPH3LQ9H4A5 285 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 ERVW-1Q9UQF0 538 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 HPSEQ9Y251 543 aa12.43□□□□□ -0.42
HDAC6-219ENST00000476625 C10orf142B7Z368 130 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 RNF225M0QZC1 329 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 O00370 1275 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 ATXN7O15265 892 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 BRINP1O60477 761 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 ACSL4O60488 711 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 MOCS2O96007 188 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 FYNP06241 537 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 PLA2G2AP14555 144 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 CD38P28907 300 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 SLC8A1P32418 973 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 PSMC2P35998 433 aaKnown RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 NDUFA8P51970 172 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 ADPRHP54922 357 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 BST2Q10589 180 aaKnown RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 NFIL3Q16649 462 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 HNRNPA1L2Q32P51 320 aaKnown RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 SGO2Q562F6 1265 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 DCAF17Q5H9S7 520 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 PITRM1Q5JRX3 1037 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 TMPRSS12Q86WS5 348 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 SIX6OS1Q8N1H7 587 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 ZNF843Q8N446 348 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 CCDC150Q8NCX0 1101 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 FBXL13Q8NEE6 735 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 TSC1Q92574 1164 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 SERAC1Q96JX3 654 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 FCRL2Q96LA5 508 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 MYOCQ99972 504 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 OMDQ99983 421 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 MIS12Q9H081 205 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 OLA1Q9NTK5 396 aaKnown RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 RCOR1Q9UKL0 485 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 NCKAP1Q9Y2A7 1128 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 PCDHB1Q9Y5F3 818 aa12.42□□□□□ -0.42
HDAC6-219ENST00000476625 SETXQ7Z333 2677 aaKnown RBP12.42□□□□□ -0.42
HDAC6-219ENST00000476625 RTN2O75298 545 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 RHOBTB3O94955 611 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 ATP5BP06576 529 aaKnown RBP12.41□□□□□ -0.42
HDAC6-219ENST00000476625 BRD2P25440 801 aaKnown RBP12.41□□□□□ -0.42
HDAC6-219ENST00000476625 PMS1P54277 932 aaKnown RBP12.41□□□□□ -0.42
HDAC6-219ENST00000476625 TBX4P57082 545 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 NXPH1P58417 271 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 PITX1P78337 314 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-219ENST00000476625 INSM1Q01101 510 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-219ENST00000476625 ZBTB16Q05516 673 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 C19orf57Q0VDD7 668 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 CUL2Q13617 745 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 PKDCCQ504Y2 493 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 C6orf118Q5T5N4 469 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 TCERG1LQ5VWI1 586 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 MSANTD2Q6P1R3 559 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 KDM7AQ6ZMT4 941 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 OR14C36Q8NHC7 312 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 TTC17Q96AE7 1141 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.41□□□□□ -0.42
HDAC6-219ENST00000476625 ABCC13Q9NSE7 274 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 SUN2Q9UH99 717 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 NAALADL1Q9UQQ1 740 aa12.41□□□□□ -0.42
HDAC6-219ENST00000476625 TRIM49BA6NDI0 452 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms