RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 APBA2Q99767 749 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 UBE2OQ9C0C9 1292 aaKnown RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 PCDHAC1Q9H158 963 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 COG4Q9H9E3 785 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 SAR1AQ9NR31 198 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 C20orf96Q9NUD7 363 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 ANGPTL2Q9UKU9 493 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 A0A088AWK7 358 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 H0YCG3 227 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 AGRPO00253 132 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 DDNO94850 711 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 GEN1Q17RS7 908 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 CYP4V2Q6ZWL3 525 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 UTS2BQ765I0 119 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 OTOP3Q7RTS5 596 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 CATSPER4Q7RTX7 472 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 IFNEQ86WN2 208 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 CMASQ8NFW8 434 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 FAM110BQ8TC76 370 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 PHF21BQ96EK2 531 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 SIGLEC10Q96LC7 697 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 ZFP42Q96MM3 310 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 FCRL3Q96P31 734 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 DTLQ9NZJ0 730 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 STX18Q9P2W9 335 aaKnown RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 SCN1AP35498 2009 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 MEIS3P2A8K0S8 358 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 DFFAO00273 331 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ATG7O95352 703 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ACADSP16219 412 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 CES1P23141 567 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ARL1P40616 181 aaPredicted RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 GRIA2P42262 883 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 IDH3AP50213 366 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 SCNN1BP51168 640 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 MAP3K7CLP57077 242 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 MED21Q13503 144 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 PLA2G4EQ3MJ16 856 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 TEDDM1Q5T9Z0 273 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ARHGAP24Q8N264 748 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 GSDMBQ8TAX9 411 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 PIWIL2Q8TC59 973 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 RCN3Q96D15 328 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 P2RY11Q96G91 374 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 KCNK16Q96T55 309 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 EBNA1BP2Q99848 306 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 SPATC1LQ9H0A9 340 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 AS3MTQ9HBK9 375 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 HOXC10Q9NYD6 342 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 PIM2Q9P1W9 311 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 EMCNQ9ULC0 261 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 SCAMP3O14828 347 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 HNRNPRO43390 633 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 FAM189A1O60320 539 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 PMPCBO75439 489 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 LSM8O95777 96 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 JCHAINP01591 159 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ITGA2BP08514 1039 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ARL4AP40617 200 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 AFF1P51825 1210 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 OCRLQ01968 901 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 KCTD2Q14681 263 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 CNPY1Q3B7I2 92 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 DALRD3Q5D0E6 543 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 PACS1Q6VY07 963 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 DENND6AQ8IWF6 608 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 RAB3IL1Q8TBN0 382 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 KCTD4Q8WVF5 259 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 TFB1MQ8WVM0 346 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 PPWD1Q96BP3 646 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 MPP4Q96JB8 637 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 FTHL17Q9BXU8 183 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 CHST12Q9NRB3 414 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ETAA1Q9NY74 926 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 PCDH10Q9P2E7 1040 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 SOX13Q9UN79 622 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ATP8B3O60423 1300 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 NFKBIEO00221 500 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ACKR2O00590 384 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 MT-CYBP00156 380 aaPredicted RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 PFKMP08237 780 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 XRCC1P18887 633 aaPredicted RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 UGT1A6P19224 532 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 PMLP29590 882 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 STIP1P31948 543 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 SNRPFP62306 86 aaKnown RBP8.87□□□□□ -0.99
USP40-203ENST00000427112 ITKQ08881 620 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 GRM1Q13255 1194 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ITGA7Q13683 1181 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 ZNF534Q76KX8 674 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 KCTD17Q8N5Z5 321 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 DCBLD1Q8N8Z6 715 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 REPS2Q8NFH8 660 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 IPMKQ8NFU5 416 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 OR6Y1Q8NGX8 325 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 HTR3CQ8WXA8 447 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 SPATA17Q96L03 361 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 CSPG4P5Q96PW8 444 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms