RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 LGI2Q8N0V4 545 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 CCDC89Q8N998 374 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 VN1R2Q8NFZ6 395 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 ETNK2Q9NVF9 386 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 DRG1Q9Y295 367 aaKnown RBP17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 CFAP69A5D8W1 941 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 ITGAVP06756 1048 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 MX2P20592 715 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 HOXC13P31276 330 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 ACTN2P35609 894 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 GUCY2DQ02846 1103 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 GBE1Q04446 702 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 XRCC4Q13426 336 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 NAA30Q147X3 362 aaPredicted RBP17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 PDK1Q15118 436 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 PRSS36Q5K4E3 855 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 MANEALQ5VSG8 457 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 C14orf80Q86SX3 495 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 IFT20Q8IY31 132 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 CMTM8Q8IZV2 173 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 LZTR1Q8N653 840 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 SLC35B2Q8TB61 432 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 CCHCR1Q8TD31 782 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 ING5Q8WYH8 240 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 SLC46A2Q9BY10 475 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 CFAP97Q9P2B7 532 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 PPARGC1AQ9UBK2 798 aaKnown RBP17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 ASIC3Q9UHC3 531 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 ARHGAP26Q9UNA1 814 aa17.64■□□□□ 0.41
CCDC28B-202ENST00000421922 C2orf16Q68DN1 1984 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 DOCK4Q8N1I0 1966 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 HACD1B0YJ81 288 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 NCAM2O15394 837 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 MAP3K6O95382 1288 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 RHOQP17081 205 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 HOXB8P17481 243 aaPredicted RBP17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 KCNC3Q14003 757 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 SLC5A9Q2M3M2 681 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 ADGRF1Q5T601 910 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 ANKRD54Q6NXT1 300 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 EP400NLQ6ZTU2 488 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 RTL3Q8N8U3 475 aaKnown RBP17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 CCNYQ8ND76 341 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 TFB1MQ8WVM0 346 aaKnown RBP17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 SLCO2A1Q92959 643 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 ZFRQ96KR1 1074 aaKnown RBP17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 GUCD1Q96NT3 240 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 TRIM51Q9BSJ1 452 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 APOL5Q9BWW9 433 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 ANKZF1Q9H8Y5 726 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 ARGLU1Q9NWB6 273 aaPredicted RBP17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 DTLQ9NZJ0 730 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 AGO1Q9UL18 857 aaKnown RBP17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 MFHAS1Q9Y4C4 1052 aa17.63■□□□□ 0.41
CCDC28B-202ENST00000421922 CHD7Q9P2D1 2997 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 GOLGA6L7A0A1B0GV03 622 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 LEFTY2O00292 366 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 STK10O94804 968 aaKnown RBP17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 IFNB1P01574 187 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 CEBPBP17676 345 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 FSHRP23945 695 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 OASLQ15646 514 aaKnown RBP17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 TTC39BQ5VTQ0 682 aaPredicted RBP17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 HEATR6Q6AI08 1181 aaKnown RBP17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 NADSYN1Q6IA69 706 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 CES5AQ6NT32 575 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 FBXL22Q6P050 247 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 TMEM184AQ6ZMB5 413 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 ALLCQ8N6M5 410 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 QKIQ96PU8 341 aaKnown RBP eCLIP17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 PRMT1Q99873 361 aaKnown RBP17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 TMEM121Q9BTD3 319 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 TRIM31Q9BZY9 425 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 EPC1Q9H2F5 836 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 EPB41L5Q9HCM4 733 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 MPP6Q9NZW5 540 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 NOTCH4Q99466 2003 aa17.62■□□□□ 0.41
CCDC28B-202ENST00000421922 NUP210Q8TEM1 1887 aaPredicted RBP17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 DFFAO00273 331 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 MOSPD3O75425 235 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 ERLIN1O75477 346 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 KRT14P02533 472 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 IGFBP4P22692 258 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 PTGIRP43119 386 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 AP1B1Q10567 949 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 PTK6Q13882 451 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 SLC45A4Q5BKX6 768 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 FAM133BQ5BKY9 247 aaKnown RBP17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 RFWD3Q6PCD5 774 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 TFAP2DQ7Z6R9 452 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 ZNF354CQ86Y25 554 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 SH3RF2Q8TEC5 729 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 ERP44Q9BS26 406 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 PARD6BQ9BYG5 372 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 BRD8Q9H0E9 1235 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 DPH5Q9H2P9 285 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 FAM114A2Q9NRY5 505 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 TDP1Q9NUW8 608 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 TMEM248Q9NWD8 314 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms