RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CABS1Q96KC9 395 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 SAMD11Q96NU1 681 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 RPRD1AQ96P16 312 aaPredicted RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 LPIN3Q9BQK8 851 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PRKD2Q9BZL6 878 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PIGVQ9NUD9 493 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PPARGC1AQ9UBK2 798 aaKnown RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 TBX21Q9UL17 535 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 KCNU1A8MYU2 1149 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 H3BQF6 201 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 GOLGA8MH3BSY2 632 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PAGE1O75459 146 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 CD48P09326 243 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 TCF4P15884 667 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PGAM1P18669 254 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PPIDQ08752 370 aaKnown RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 ASPHQ12797 758 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 TAF10Q12962 218 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 SEMA5AQ13591 1074 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 MRPL58Q14197 206 aaKnown RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 DDR2Q16832 855 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 SPANXN3Q5MJ09 141 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 GKAP1Q5VSY0 366 aaPredicted RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 TRAF7Q6Q0C0 670 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 ARFGAP1Q8N6T3 406 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 PQLC3Q8N755 202 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 CALML6Q8TD86 181 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 FCRL2Q96LA5 508 aaPredicted RBP8.62□□□□□ -1.03
USP54-203ENST00000418501 PGLYRP2Q96PD5 576 aa8.62□□□□□ -1.03
USP54-203ENST00000418501 RAMP2O60895 175 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 XYLBO75191 536 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 CDH17Q12864 832 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 MBTPS1Q14703 1052 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 SYPL2Q5VXT5 272 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 NCBP2-AS2Q69YL0 99 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 SLC8B1Q6J4K2 584 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 KLHDC10Q6PID8 442 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 RHBDF2Q6PJF5 856 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 RTL3Q8N8U3 475 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 PPP1R14CQ8TAE6 165 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 PHOSPHO2Q8TCD6 241 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 CPT1BQ92523 772 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 TOP1MTQ969P6 601 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 CXCL16Q9H2A7 254 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 PRDM12Q9H4Q4 367 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ENTPD7Q9NQZ7 604 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 DTLQ9NZJ0 730 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 GMIPQ9P107 970 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 DNAJB4Q9UDY4 337 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 HCRTO43612 131 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 TLR5O60602 858 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ZWINTO95229 277 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 SNRPAP09012 282 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 BRAFP15056 766 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 CCT5P48643 541 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ATP1A2P50993 1020 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 DUSP4Q13115 394 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 THOC5Q13769 683 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 SH3PXD2AQ5TCZ1 1133 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 PDE12Q6L8Q7 609 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 LRRC8BQ6P9F7 803 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 NPNTQ6UXI9 565 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 TMC7Q7Z402 723 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 SLC26A11Q86WA9 606 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 LRRC6Q86X45 466 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ATAD1Q8NBU5 361 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 MICAL1Q8TDZ2 1067 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 PTCD2Q8WV60 388 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 AZIN2Q96A70 460 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 PAWRQ96IZ0 340 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 TSGA13Q96PP4 275 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 PAAF1Q9BRP4 392 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 NEUROG2Q9H2A3 272 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 VPS45Q9NRW7 570 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 LGALS13Q9UHV8 139 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 SLC8A2Q9UPR5 921 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 SH3BP1Q9Y3L3 701 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 SLC4A7Q9Y6M7 1214 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 DOCK3Q8IZD9 2030 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 DGKIO75912 1065 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 VIMP08670 466 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 SLCO1A2P46721 670 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 DSG1Q02413 1049 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ZRSR2Q15696 482 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 NAT8LQ8N9F0 302 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ZMIZ2Q8NF64 920 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ADAM32Q8TC27 787 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 SRPK1Q96SB4 655 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 TXLNGYQ9BZA5 131 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ACSS3Q9H6R3 686 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ETNK1Q9HBU6 452 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 DNAJC17Q9NVM6 304 aaKnown RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 TTLL3Q9Y4R7 772 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 HHLA1C9JL84 531 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 BEST1O76090 585 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 DDX6P26196 483 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP54-203ENST00000418501 PPARGP37231 505 aaPredicted RBP8.61□□□□□ -1.03
USP54-203ENST00000418501 SLC12A2P55011 1212 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 MLLT6P55198 1093 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms