RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 DEUP1Q05D60 604 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 ZNF252P-AS1Q0IIN9 211 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 CALCOCO2Q13137 446 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 EIF4EBP2Q13542 120 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 PPP1R7Q15435 360 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 TRIP4Q15650 581 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 CCNG2Q16589 344 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 AAK1Q2M2I8 961 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 RAB6CQ53S08 254 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 OTUD1Q5VV17 481 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 CCDC50Q8IVM0 306 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 TTC16Q8NEE8 873 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 ST13P5Q8NFI4 369 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 ATL2Q8NHH9 583 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 FBXO25Q8TCJ0 367 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 FAM172AQ8WUF8 416 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 ACSF2Q96CM8 615 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 PGAP3Q96FM1 320 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 ZFRQ96KR1 1074 aaKnown RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 OSBPL8Q9BZF1 889 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 RAB6CQ9H0N0 254 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 TSPYL1Q9H0U9 437 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 PABPC3Q9H361 631 aaKnown RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 DDX56Q9NY93 547 aaKnown RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 TLR6Q9Y2C9 796 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 HBS1LQ9Y450 684 aaKnown RBP13.87□□□□□ -0.19
LIMS1-204ENST00000409441 EYSQ5T1H1 3165 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 MYO16Q9Y6X6 1858 aa13.87□□□□□ -0.19
LIMS1-204ENST00000409441 IRAK2O43187 625 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 RNF8O76064 485 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 PRAMEF12O95522 483 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 DESP17661 470 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ITIH2P19823 946 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 NR1D1P20393 614 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 VIPR2P41587 438 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 KCNQ1P51787 676 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ATXN1P54253 815 aaKnown RBP13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ACAP1Q15027 740 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ZC3H12AQ5D1E8 599 aaKnown RBP13.86□□□□□ -0.19
LIMS1-204ENST00000409441 STRADAQ7RTN6 431 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 BNIPLQ7Z465 357 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 HOOK3Q86VS8 718 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 CELF5Q8N6W0 485 aaKnown RBP13.86□□□□□ -0.19
LIMS1-204ENST00000409441 SH3RF2Q8TEC5 729 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 RNF34Q969K3 372 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 TRPV4Q9HBA0 871 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 PIGVQ9NUD9 493 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 THEGQ9P2T0 379 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 EPS15L1Q9UBC2 864 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ATP8A1Q9Y2Q0 1164 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 XIRP2A4UGR9 3374 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 LEFTY2O00292 366 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 STC2O76061 302 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 IRF1P10914 325 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 IL9P15248 144 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 RDXP35241 583 aaKnown RBP13.86□□□□□ -0.19
LIMS1-204ENST00000409441 KCNJ1P48048 391 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 CXCR3P49682 368 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 IRAK1P51617 712 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 HDAC4P56524 1084 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 LMNB2Q03252 620 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 DENND2CQ68D51 928 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 TANGO2Q6ICL3 276 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 LRRC31Q6UY01 552 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 POLNQ7Z5Q5 900 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ARFGAP1Q8N6T3 406 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 BBOF1Q8ND07 529 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ADAMTS19Q8TE59 1207 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 C1orf54Q8WWF1 131 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 WBP2Q969T9 261 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 SLC39A13Q96H72 371 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 LRRC3BQ96PB8 259 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 WDCPQ9H6R7 721 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ZFP14Q9HCL3 533 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 TMEM51Q9NW97 253 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 CFAP97Q9P2B7 532 aa13.86□□□□□ -0.19
LIMS1-204ENST00000409441 ANAPC1Q9H1A4 1944 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 SRRM3A6NNA2 597 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-204ENST00000409441 C2CD4DB7Z1M9 353 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 IGLV3-27P01718 113 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 SLC2A3P11169 496 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 CCR1P32246 355 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 SSR1P43307 286 aaKnown RBP13.85□□□□□ -0.19
LIMS1-204ENST00000409441 HARS2P49590 506 aaKnown RBP13.85□□□□□ -0.19
LIMS1-204ENST00000409441 RING1Q06587 406 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 KCTD16Q68DU8 428 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 SCYL2Q6P3W7 929 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 DRICH1Q6PGQ1 229 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-204ENST00000409441 PARM1Q6UWI2 310 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 FAM131BQ86XD5 332 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 UNC45BQ8IWX7 931 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 PLCD3Q8N3E9 789 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 SH2D3CQ8N5H7 860 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 TDRD5Q8NAT2 981 aaKnown RBP13.85□□□□□ -0.19
LIMS1-204ENST00000409441 PLD4Q96BZ4 506 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 RSPRY1Q96DX4 576 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 SNF8Q96H20 258 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 FCRL2Q96LA5 508 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-204ENST00000409441 HERPUD2Q9BSE4 406 aa13.85□□□□□ -0.19
LIMS1-204ENST00000409441 TMEM109Q9BVC6 243 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms