RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 EFR3BQ9Y2G0 817 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 NUP210Q8TEM1 1887 aaPredicted RBP18.62■□□□□ 0.57
SDC1-203ENST00000403076 DRGXA6NNA5 263 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 APOL1O14791 398 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 FGF10O15520 208 aaPredicted RBP18.62■□□□□ 0.57
SDC1-203ENST00000403076 CYBBP04839 570 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 PUS10Q3MIT2 529 aaKnown RBP18.62■□□□□ 0.57
SDC1-203ENST00000403076 MPPE1Q53F39 396 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 MFSD6LQ8IWD5 586 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 KIAA1958Q8N8K9 716 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 HJURPQ8NCD3 748 aaPredicted RBP18.62■□□□□ 0.57
SDC1-203ENST00000403076 DDI1Q8WTU0 396 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 OSCP1Q8WVF1 389 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 MAIP1Q8WWC4 291 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 ELSPBP1Q96BH3 223 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 FAF2Q96CS3 445 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 SMARCAL1Q9NZC9 954 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 PPARGC1AQ9UBK2 798 aaKnown RBP18.62■□□□□ 0.57
SDC1-203ENST00000403076 RNF14Q9UBS8 474 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 DOCK8Q8NF50 2099 aa18.62■□□□□ 0.57
SDC1-203ENST00000403076 C2CD4DB7Z1M9 353 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 ZFXP17010 805 aaPredicted RBP18.61■□□□□ 0.57
SDC1-203ENST00000403076 RHOQP17081 205 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 PSMC3P17980 439 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 RPS24P62847 133 aaKnown RBP18.61■□□□□ 0.57
SDC1-203ENST00000403076 DPYSQ14117 519 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 SMAD2Q15796 467 aaKnown RBP18.61■□□□□ 0.57
SDC1-203ENST00000403076 TMCO3Q6UWJ1 677 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 VITQ6UXI7 678 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 TFAP2DQ7Z6R9 452 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 CIR1Q86X95 450 aaPredicted RBP18.61■□□□□ 0.57
SDC1-203ENST00000403076 CREG2Q8IUH2 290 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 FAM217AQ8IXS0 508 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 ZNF683Q8IZ20 524 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 PQLC3Q8N755 202 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 ACTRT1Q8TDG2 376 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 FGF14Q92915 247 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 BHMTQ93088 406 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 MYEOVQ96EZ4 313 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 HERPUD2Q9BSE4 406 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 PRDM16Q9HAZ2 1276 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 PRDM6Q9NQX0 595 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 DONSONQ9NYP3 566 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 TTC7AQ9ULT0 858 aaPredicted RBP18.61■□□□□ 0.57
SDC1-203ENST00000403076 DENND4AQ7Z401 1863 aa18.61■□□□□ 0.57
SDC1-203ENST00000403076 IGLV3-10A0A075B6K4 115 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 TBL1XO60907 577 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 ECI2O75521 394 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 CNTN5O94779 1100 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 HOXC13P31276 330 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 IRAK1P51617 712 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 TFF2Q03403 129 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 ADCY2Q08462 1091 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 GRM2Q14416 872 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 WHAMMP3Q1A5X7 153 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 C5orf22Q49AR2 442 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 ALFQ53S48 1182 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 TTC39BQ5VTQ0 682 aaPredicted RBP18.6■□□□□ 0.57
SDC1-203ENST00000403076 C1orf228Q6PIY5 440 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 BBS12Q6ZW61 710 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 CCDC117Q8IWD4 279 aaPredicted RBP18.6■□□□□ 0.57
SDC1-203ENST00000403076 PLCD3Q8N3E9 789 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 PRICKLE1Q96MT3 831 aaPredicted RBP18.6■□□□□ 0.57
SDC1-203ENST00000403076 PLA2G2FQ9BZM2 168 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 SPHK2Q9NRA0 654 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 ETNK2Q9NVF9 386 aa18.6■□□□□ 0.57
SDC1-203ENST00000403076 TCRBV7S2A1N4TA0A589 114 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 SGSHP51688 502 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 CDH4P55283 916 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 PDGFRLQ15198 375 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 ANO4Q32M45 955 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 SLC9A4Q6AI14 798 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 ADGRG2Q8IZP9 1017 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 RTL3Q8N8U3 475 aaKnown RBP18.59■□□□□ 0.57
SDC1-203ENST00000403076 DEPDC1BQ8WUY9 529 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 IRF7Q92985 503 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 HAUS1Q96CS2 278 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 ZFYVE19Q96K21 471 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 HEY1Q9Y5J3 304 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 MRFAP1Q9Y605 127 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 NUMBLQ9Y6R0 609 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.59■□□□□ 0.57
SDC1-203ENST00000403076 A0A1B0GVM2 712 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 TCAF2A6NFQ2 919 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 KRIT1O00522 736 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 DCLK1O15075 740 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 CLDN11O75508 207 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 NFATC1O95644 943 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 TGM2P21980 687 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 SERPINB6P35237 376 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 CKAP4Q07065 602 aaKnown RBP18.59■□□□□ 0.57
SDC1-203ENST00000403076 ZNF177Q13360 481 aaPredicted RBP18.59■□□□□ 0.57
SDC1-203ENST00000403076 HTR4Q13639 388 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 EML3Q32P44 896 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 LY6G5CQ5SRR4 150 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 TRIM68Q6AZZ1 485 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 TMEM25Q86YD3 366 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 CARNMT1Q8N4J0 409 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 PLD5Q8N7P1 536 aa18.59■□□□□ 0.57
SDC1-203ENST00000403076 P3H4Q92791 437 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms