RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 TMPRSS3P57727 454 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 GPR17Q13304 367 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 PDIA5Q14554 519 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 CASP8Q14790 479 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 SHROOM1Q2M3G4 852 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 KRT74Q7RTS7 529 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ZNF554Q86TJ5 538 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 SUSD3Q96L08 255 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 CARD9Q9H257 536 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 SPASTQ9UBP0 616 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 CACNA1FO60840 1977 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 LAMA3Q16787 3333 aa8.34□□□□□ -1.08
LIMS1-203ENST00000393310 HIDE1A8MVS5 230 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 GFRA2O00451 464 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CES2O00748 559 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 PSMA7O14818 248 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 PFDN6O15212 129 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CBFA2T3O75081 653 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 VPS4BO75351 444 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 IGHDP01880 384 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 ENDOUP21128 410 aaKnown RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 ACADSBP45954 432 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 GATMP50440 423 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 GSDMDP57764 484 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 TRIM14Q14142 442 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 NCAPHQ15003 741 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 ZYG11AQ6WRX3 759 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 MRPL10Q7Z7H8 261 aaKnown RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 FAM71BQ8TC56 605 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SLC22A17Q8WUG5 538 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 FEM1CQ96JP0 617 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 NXF3Q9H4D5 531 aaKnown RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 DIABLOQ9NR28 239 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SMPD4Q9NXE4 827 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 STMN3Q9NZ72 180 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 VPS4AQ9UN37 437 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 NEUROG3Q9Y4Z2 214 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 RFPL2O75678 378 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CRTAPO75718 401 aaPredicted RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 HOXD8P13378 290 aaPredicted RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 LIMK1P53667 647 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 OVGP1Q12889 678 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SPIDRQ14159 915 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 ERAP2Q6P179 960 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 LVRNQ6Q4G3 990 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 GPD1LQ8N335 351 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SH3RF2Q8TEC5 729 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 USP13Q92995 863 aaPredicted RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 FOXP3Q9BZS1 431 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 USP29Q9HBJ7 922 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SGK2Q9HBY8 427 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 PCDH12Q9NPG4 1184 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SENP1Q9P0U3 644 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SCN9AQ15858 1988 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 EP400Q96L91 3159 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 E2F8A0AVK6 867 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 EIF3FO00303 357 aaPredicted RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 BCAT2O15382 392 aaPredicted RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 KCNK5O95279 499 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 AGR2O95994 175 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CYP21A2P08686 494 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 ATP4AP20648 1035 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CTHP32929 405 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 ADD1P35611 737 aaKnown RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 PBX3P40426 434 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 JAG1P78504 1218 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 HTR4Q13639 388 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SPIRE2Q8WWL2 714 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CDKL2Q92772 493 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 TATDN2Q93075 761 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 NACC2Q96BF6 587 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 KLHDC7BQ96G42 594 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SMARCD1Q96GM5 515 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 HHIPQ96QV1 700 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 TARS2Q9BW92 718 aaKnown RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 FOXP1Q9H334 677 aaPredicted RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 MMRN2Q9H8L6 949 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 RIF1Q5UIP0 2472 aaKnown RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 F5H5T6 163 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SLC4A1P02730 911 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 PLA2G4BP0C869 781 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 IL32P24001 234 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 FNTAP49354 379 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SULT1E1P49888 294 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 HSD17B7P56937 341 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 RBPJQ06330 500 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CTC1Q2NKJ3 1217 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CHSY1Q86X52 802 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 TCAIMQ8N3R3 496 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SCAIQ8N9R8 606 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 PRSS33Q8NF86 280 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 CNOT6LQ96LI5 555 aaKnown RBP8.33□□□□□ -1.08
LIMS1-203ENST00000393310 EPAS1Q99814 870 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 SENP2Q9HC62 589 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 PCDH18Q9HCL0 1135 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 TRPV5Q9NQA5 729 aa8.33□□□□□ -1.08
LIMS1-203ENST00000393310 A6NCN8 305 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 GNB5O14775 395 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 CSTF2P33240 577 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMS1-203ENST00000393310 PCBP4P57723 403 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms