RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MZT2AQ6P582 158 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 MILR1Q7Z6M3 343 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 FAM131BQ86XD5 332 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 QRFPRQ96P65 431 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 HMG20AQ9NP66 347 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 ARIH1Q9Y4X5 557 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 MROH7Q68CQ1 1323 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 TRIM66O15016 1216 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 SERPINE1P05121 402 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 C1QBPQ07021 282 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 WDR93Q6P2C0 686 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 HASPINQ8TF76 798 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 RACGAP1Q9H0H5 632 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 PLAGL2Q9UPG8 496 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 HACD1B0YJ81 288 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 CSF1RP07333 972 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 PTPN11Q06124 597 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 KIAA0408Q6ZU52 694 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 PHF21BQ96EK2 531 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 C9orf16Q9BUW7 83 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 EPB41L4AQ9HCS5 686 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 CASTOR2A6NHX0 329 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 OR6B1O95007 311 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 PARNO95453 639 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 LDLRP01130 860 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 MAPTP10636 758 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 TRIM32Q13049 653 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 ZSWIM7Q19AV6 140 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 MFSD7Q6UXD7 560 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 LZTR1Q8N653 840 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 MID1IP1Q9NPA3 183 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 THAP1Q9NVV9 213 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 MAPRE3Q9UPY8 281 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 SH3GLB1Q9Y371 365 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 EPN2O95208 641 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 PLEKP08567 350 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 KLRC2P26717 231 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 CAP2P40123 477 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 GSTM5P46439 218 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 AGO4Q9HCK5 861 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF112Q9UJU3 913 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ZMYM2Q9UBW7 1377 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 F8VZ95 297 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 PHGDHO43175 533 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ITGB6P18564 788 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 LAMTOR4Q0VGL1 99 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 RALGDSQ12967 914 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 C2CD6Q53TS8 623 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 FBXO16Q8IX29 292 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 SERPINB11Q96P15 392 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 LIMD1Q9UGP4 676 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 PCDHA3Q9Y5H8 950 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 STAT5AP42229 794 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 CYP2A13Q16696 494 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 SPANXN2Q5MJ10 180 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 LRRC49Q8IUZ0 686 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 GMCL1P1Q8NEA9 526 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 MMADHCQ9H3L0 296 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 XYLBO75191 536 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 TNFAIP8O95379 198 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 HLA-DQA2P01906 255 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 TYMPP19971 482 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 NTSP30990 170 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 FNDC3BQ53EP0 1204 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 SCARA3Q6AZY7 606 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 FAM220AQ7Z4H9 259 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ULK2Q8IYT8 1036 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 DNERQ8NFT8 737 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 NMD3Q96D46 503 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 MAML3Q96JK9 1138 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 TRAPPC9Q96Q05 1148 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 GPRC5CQ9NQ84 441 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 JCADQ9P266 1359 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF232Q9UNY5 417 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ADGRB3O60242 1522 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 INPP4BO15327 924 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 MED24O75448 989 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 CCDC130P13994 396 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 SPIDRQ14159 915 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 TOMM20Q15388 145 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 SETMARQ53H47 684 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 WASHC2DQ5SRD0 308 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 N4BP2L1Q5TBK1 243 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 FAM20CQ8IXL6 584 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 STK40Q8N2I9 435 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF557Q8N988 423 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 SCAIQ8N9R8 606 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 CENPIQ92674 756 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 MTG1Q9BT17 334 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 C15orf38-AP3S2A0A0A6YYH1 394 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 CARNS1A5YM72 827 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ZBTB14O43829 449 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 BACE1P56817 501 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 BOP1Q14137 746 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 GIT2Q14161 759 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 VPS72Q15906 364 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 RD3Q7Z3Z2 195 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 ARPINQ7Z6K5 226 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 LINC00116Q8NCU8 138 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 CBWD1Q9BRT8 395 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms