RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 OGFRL1Q5TC84 451 aaPredicted RBP16.81■□□□□ 0.28
SDC4-201ENST00000372733 EFCAB12Q6NXP0 572 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 CHST13Q8NET6 341 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 DCUN1D1Q96GG9 259 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 OR52B2Q96RD2 323 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 TXNDC16Q9P2K2 825 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 MORF4L1Q9UBU8 362 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 MFSD11O43934 449 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 MX2P20592 715 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 EDNRBP24530 442 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 ZNF280AP59817 542 aaPredicted RBP16.8■□□□□ 0.28
SDC4-201ENST00000372733 PPM1LQ5SGD2 360 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 LRRC8BQ6P9F7 803 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 PQLC1Q8N2U9 271 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 PPP1R36Q96LQ0 422 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 BTBD9Q96Q07 612 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 KCNK16Q96T55 309 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 MRPL45Q9BRJ2 306 aaKnown RBP16.8■□□□□ 0.28
SDC4-201ENST00000372733 SLC4A5Q9BY07 1137 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 CDH19Q9H159 772 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 HOXC10Q9NYD6 342 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 SEPT10Q9P0V9 454 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 PCDHB12Q9Y5F1 795 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 PTPRFP10586 1907 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 GOLGA8QA0A0J9YX86 632 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 GOLGA8OA6NCC3 632 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 C19orf81C9J6K1 198 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 GOLGA8NF8WBI6 632 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 RNF103O00237 685 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 AIM2O14862 343 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 PSMB4P28070 264 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 PMLP29590 882 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 SERPINB5P36952 375 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 NR2C2P49116 596 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 NUDT2P50583 147 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 IGBP1P78318 339 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 PKDCCQ504Y2 493 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 ARMC3Q5W041 872 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 MICALL2Q8IY33 904 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 DCLK2Q8N568 766 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 DRAXINQ8NBI3 349 aaPredicted RBP16.8■□□□□ 0.28
SDC4-201ENST00000372733 MOCOSQ96EN8 888 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 LENG8Q96PV6 779 aaPredicted RBP16.8■□□□□ 0.28
SDC4-201ENST00000372733 PDZD7Q9H5P4 517 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 ZNF112Q9UJU3 913 aa16.8■□□□□ 0.28
SDC4-201ENST00000372733 G3BP2Q9UN86 482 aaKnown RBP16.8■□□□□ 0.28
SDC4-201ENST00000372733 PEX1O43933 1283 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 MLNP12872 115 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 ZFXP17010 805 aaPredicted RBP16.79■□□□□ 0.28
SDC4-201ENST00000372733 FSCBQ5H9T9 825 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 EPGNQ6UW88 154 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 DTNBP1Q96EV8 351 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 PDGFDQ9GZP0 370 aaPredicted RBP16.79■□□□□ 0.28
SDC4-201ENST00000372733 R3HDMLQ9H3Y0 253 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 UBAP1Q9NZ09 502 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 SSX2IPQ9Y2D8 614 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 NME7Q9Y5B8 376 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 SMIM31A0A1B0GVY4 71 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 ZNF487B1APH4 448 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 NEMP1O14524 444 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 DGKIO75912 1065 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 DESP17661 470 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 MSX2P35548 267 aaPredicted RBP16.79■□□□□ 0.28
SDC4-201ENST00000372733 GP5P40197 560 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 MRPS22P82650 360 aaKnown RBP16.79■□□□□ 0.28
SDC4-201ENST00000372733 IRF9Q00978 393 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 DLG2Q15700 870 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 INSCQ1MX18 579 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.79■□□□□ 0.28
SDC4-201ENST00000372733 TMEM110Q86TL2 294 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 MPP4Q96JB8 637 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 RTKNQ9BST9 563 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 DPP3Q9NY33 737 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 PSMD13Q9UNM6 376 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 CDY2AQ9Y6F7 541 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 CDY1Q9Y6F8 540 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 RPS6KL1Q9Y6S9 549 aa16.79■□□□□ 0.28
SDC4-201ENST00000372733 HCRTO43612 131 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 FBXO21O94952 628 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 PRDX6P30041 224 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 SOWAHAQ2M3V2 549 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 SNX32Q86XE0 403 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 SLC35F5Q8WV83 523 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 CERS2Q96G23 380 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 WDR55Q9H6Y2 383 aaPredicted RBP16.78■□□□□ 0.28
SDC4-201ENST00000372733 CAB39LQ9H9S4 337 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 MYOCOSA0A1B0GUC4 107 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 PPEF2O14830 753 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 PYGLP06737 847 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 MCF2P10911 925 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 THOP1P52888 689 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 NAB1Q13506 487 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 AMHR2Q16671 573 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 LRRC23Q53EV4 343 aaPredicted RBP16.78■□□□□ 0.28
SDC4-201ENST00000372733 TDRD5Q8NAT2 981 aaKnown RBP16.78■□□□□ 0.28
SDC4-201ENST00000372733 COPS5Q92905 334 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 PRICKLE1Q96MT3 831 aaPredicted RBP16.78■□□□□ 0.28
SDC4-201ENST00000372733 FCRL3Q96P31 734 aaPredicted RBP16.78■□□□□ 0.28
SDC4-201ENST00000372733 ASB7Q9H672 318 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 PRMT7Q9NVM4 692 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms