RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 TNNC1P63316 161 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 ZNF211Q13398 564 aaPredicted RBP8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 QPCTQ16769 361 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 ZNF776Q68DI1 518 aaPredicted RBP8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 ATG14Q6ZNE5 492 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 CLEC20AQ6ZU45 233 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 CHST9Q7L1S5 443 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 TMC6Q7Z403 805 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 SYCP3Q8IZU3 236 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 EXTL1Q92935 676 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 SERAC1Q96JX3 654 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 LMLNQ96KR4 655 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 AK8Q96MA6 479 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 SLC46A1Q96NT5 459 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 TWNKQ96RR1 684 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 OSBPL2Q9H1P3 480 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 ERVMER34-1Q9H9K5 563 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 KCNK4Q9NYG8 393 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 ARHGAP20Q9P2F6 1191 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 LIMCH1Q9UPQ0 1083 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 EXOC7Q9UPT5 735 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 LRBAP50851 2863 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 ABCA12Q86UK0 2595 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 NBASA2RRP1 2371 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 ATP8B3O60423 1300 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 FRMD3A2A2Y4 597 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 CDRT15L2A8MXV6 281 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 VNN1O95497 513 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 STAU1O95793 577 aaKnown RBP8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 CCNYL3P0C7X3 344 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 ADORA2BP29275 332 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 CCR5P51681 352 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 E2F1Q01094 437 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 GOLGA8FQ08AF8 430 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 GOLGA8DPQ0D2H9 430 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 EFEMP1Q12805 493 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 RILPL1Q5EBL4 403 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 C3orf38Q5JPI3 329 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 MBLAC2Q68D91 279 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 CCDC81Q6ZN84 652 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 USP30Q70CQ3 517 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 LSMEM2Q8N112 164 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 CPXM2Q8N436 756 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 OR2T34Q8NGX1 318 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 GANCQ8TET4 914 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 DDI1Q8WTU0 396 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 CCDC127Q96BQ5 260 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 ATXN7L3BQ96GX2 97 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 MRGPRX3Q96LB0 322 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 PSMG3-AS1Q96PY0 264 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 CGRRF1Q99675 332 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 SLC2A11Q9BYW1 496 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 FBXO44Q9H4M3 255 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 OLFML3Q9NRN5 406 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 THSD1Q9NS62 852 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 SEL1LQ9UBV2 794 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 RASAL2Q9UJF2 1139 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 NAGPAQ9UK23 515 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 MAN2B2Q9Y2E5 1009 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 R3HCC1Q9Y3T6 440 aaKnown RBP8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 KIF3AQ9Y496 699 aa8.86□□□□□ -0.99
HMGB1P39-201ENST00000366304 FAM187AA6NFU0 413 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 FFAR2O15552 330 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 TGFB1I1O43294 461 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 LATO43561 262 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 LZTS3O60299 673 aaPredicted RBP8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 NOBOXO60393 691 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 RNASEH2AO75792 299 aaKnown RBP8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 DLDP09622 509 aaKnown RBP8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 CKMT1AP12532 417 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 GAP43P17677 238 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 TGM2P21980 687 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 DGKAP23743 735 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 CHKAP35790 457 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 KIF11P52732 1056 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 NDST1P52848 882 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 ADPRHP54922 357 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 HMGN5P82970 282 aaKnown RBP8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 TLE1Q04724 770 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 CYP24A1Q07973 514 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 PSMD6Q15008 389 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 CST6Q15828 149 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 IGFBP7Q16270 282 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 ISXQ2M1V0 245 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 TTC31Q49AM3 519 aaPredicted RBP8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 C9orf64Q5T6V5 341 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 MCTP1Q6DN14 999 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 IGF2-ASQ6U949 168 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 MMAAQ8IVH4 418 aaKnown RBP8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 CRYBG2Q8N1P7 616 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 ZNF276Q8N554 614 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 FAM184AQ8NB25 1140 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 OR4C6Q8NH72 309 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 NDRG1Q92597 394 aaKnown RBP8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 MYEOVQ96EZ4 313 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 DEPDC7Q96QD5 511 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 FAM129BQ96TA1 746 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 GGA2Q9UJY4 613 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 INTS6Q9UL03 887 aaKnown RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms