RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 EPHA7Q15375 998 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 CDC37Q16543 378 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 KBTBD12Q3ZCT8 623 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SETMARQ53H47 684 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 NHSL2Q5HYW2 709 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 CEACAM20Q6UY09 585 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SYNE3Q6ZMZ3 975 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 KIAA0408Q6ZU52 694 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 DENND5BQ6ZUT9 1274 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ADGRE4PQ86SQ3 457 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 YAF2Q8IY57 180 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 TMEM102Q8N9M5 508 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 TERB1Q8NA31 727 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 NETO2Q8NC67 525 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 CXorf38Q8TB03 319 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 M1APQ8TC57 530 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 FAM216AQ8WUB2 273 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 UCMAQ8WVF2 138 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 USP13Q92995 863 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 LENG9Q96B70 501 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 RSPRY1Q96DX4 576 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 THAP11Q96EK4 314 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SGSM3Q96HU1 749 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 YTHDC1Q96MU7 727 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 TMEM204Q9BSN7 226 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 OSBPL1AQ9BXW6 950 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 GTPBP4Q9BZE4 634 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 GPR61Q9BZJ8 451 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 PIF1Q9H611 641 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ARMT1Q9H993 441 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 RAVER2Q9HCJ3 691 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 PRDM9Q9NQV7 894 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ZNF302Q9NR11 478 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 FETUBQ9UGM5 382 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 PCDHA7Q9UN72 937 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 C15orf41Q9Y2V0 281 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 MRPS18CQ9Y3D5 142 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 PCDHA1Q9Y5I3 950 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ZFYVE26Q68DK2 2539 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 CHD9Q3L8U1 2897 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ARL5CA6NH57 179 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 MKRN2OSH3BPM6 223 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 CCER2I3L3R5 266 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 VENTXO95231 258 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 RASGRP1O95267 797 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ALBP02768 609 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 KRT1P04264 644 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 DCNP07585 359 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 UBTFL1P0CB47 393 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 NHLRC4P0CG21 123 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 THRAP10827 490 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 IMPDH2P12268 514 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 GCH1P30793 250 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 NOS2P35228 1153 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 GTF2F1P35269 517 aaKnown RBP eCLIP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SLC1A4P43007 532 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ACTR2P61160 394 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SLFN5Q08AF3 891 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 DMPKQ09013 629 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 NCBP1Q09161 790 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 TRIM29Q14134 588 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 HLTFQ14527 1009 aaKnown RBP eCLIP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 CWF19L2Q2TBE0 894 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SLFNL1Q499Z3 407 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 C14orf28Q4W4Y0 310 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 VPS53Q5VIR6 699 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ZNF776Q68DI1 518 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 CCDC186Q7Z3E2 898 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ARHGAP22Q7Z5H3 698 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 FERMT3Q86UX7 667 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 PHC3Q8NDX5 983 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 NSUN7Q8NE18 718 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SEMA6DQ8NFY4 1073 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 FBXO18Q8NFZ0 1043 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ERCC4Q92889 916 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 AJUBAQ96IF1 538 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 XPO6Q96QU8 1125 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 RBM15Q96T37 977 aaKnown RBP eCLIP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 DDX50Q9BQ39 737 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 KLF16Q9BXK1 252 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 IKZF4Q9H2S9 585 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 CRTAC1Q9NQ79 661 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 GDF3Q9NR23 364 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 C9orf78Q9NZ63 289 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SERGEFQ9UGK8 458 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 DBNLQ9UJU6 430 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 TSPAN16Q9UKR8 245 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 SCML2Q9UQR0 700 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 POLHQ9Y253 713 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 BTRCQ9Y297 605 aa1.66□□□□□ -2.14
LINC00643-201ENST00000334389 ZBTB32Q9Y2Y4 487 aaPredicted RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 MRPS23Q9Y3D9 190 aaKnown RBP1.66□□□□□ -2.14
LINC00643-201ENST00000334389 FRMD3A2A2Y4 597 aa1.65□□□□□ -2.14
LINC00643-201ENST00000334389 LRRC72A6NJI9 287 aa1.65□□□□□ -2.14
LINC00643-201ENST00000334389 A6NNZ2 444 aa1.65□□□□□ -2.14
LINC00643-201ENST00000334389 AKR1B15C9JRZ8 316 aaPredicted RBP1.65□□□□□ -2.14
LINC00643-201ENST00000334389 NDUFS8O00217 210 aa1.65□□□□□ -2.14
LINC00643-201ENST00000334389 SYT5O00445 386 aa1.65□□□□□ -2.14
LINC00643-201ENST00000334389 GIPC1O14908 333 aa1.65□□□□□ -2.14
LINC00643-201ENST00000334389 SNAP91O60641 907 aa1.65□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms