RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 TMEM39AQ9NV64 488 aa17.43■□□□□ 0.38
DDX41-201ENST00000330503 IGSF9Q9P2J2 1179 aa17.43■□□□□ 0.38
DDX41-201ENST00000330503 PSMC3IPQ9P2W1 217 aaPredicted RBP17.43■□□□□ 0.38
DDX41-201ENST00000330503 RASA4BC9J798 803 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 RASA4O43374 803 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 ATP2A2P16615 1042 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 GARSP41250 739 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 SMARCB1Q12824 385 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 NR1H3Q13133 447 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 KLHL38Q2WGJ6 581 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 MGAT5BQ3V5L5 792 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 PID1Q7Z2X4 250 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 PRPF39Q86UA1 669 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 PDCD7Q8N8D1 485 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 ZSCAN18Q8TBC5 510 aaPredicted RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 DCAKDQ8WVC6 231 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 CELF6Q96J87 481 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 ZNF333Q96JL9 665 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 SERPINB11Q96P15 392 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 PAFAH2Q99487 392 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 SEPT5Q99719 369 aaPredicted RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 FERMT1Q9BQL6 677 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 GORASP1Q9BQQ3 440 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 KCNK9Q9NPC2 374 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 TLR6Q9Y2C9 796 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 TTLL3Q9Y4R7 772 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 HS3ST4Q9Y661 456 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 CDY1Q9Y6F8 540 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 COL4A6Q14031 1691 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 MYO18AQ92614 2054 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 RTN3O95197 1032 aaPredicted RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 TBX18O95935 607 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 MX2P20592 715 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 ALDH7A1P49419 539 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 MLLT6P55198 1093 aaPredicted RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 CDK16Q00536 496 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 TAF10Q12962 218 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 ARHGAP12Q8IWW6 846 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 RNF168Q8IYW5 571 aaPredicted RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 FBXO22Q8NEZ5 403 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 FBXO32Q969P5 355 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 LRRC39Q96DD0 335 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 CYTH2Q99418 400 aa17.42■□□□□ 0.38
DDX41-201ENST00000330503 OXCT2Q9BYC2 517 aaPredicted RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 XAB2Q9HCS7 855 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 EIF2B3Q9NR50 452 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.42■□□□□ 0.382e-8■■□□□ 12.8
DDX41-201ENST00000330503 ZC3H7BQ9UGR2 993 aaKnown RBP17.42■□□□□ 0.38
DDX41-201ENST00000330503 GREB1Q4ZG55 1949 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 A0A1W2PPM1 405 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 NDUFAB1O14561 156 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 SPAG6O75602 509 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 FAM107AO95990 144 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 MOCS2O96007 188 aaPredicted RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 CD68P34810 354 aaPredicted RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 SERPINB6P35237 376 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 CCT5P48643 541 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 ZNF473Q8WTR7 871 aaKnown RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 MZB1Q8WU39 189 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 IGSF21Q96ID5 467 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 EBNA1BP2Q99848 306 aaKnown RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 PRMT1Q99873 361 aaKnown RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 TRIM56Q9BRZ2 755 aaKnown RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 CLIC5Q9NZA1 410 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 WDR27A2RRH5 827 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 ZBTB24O43167 697 aaPredicted RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 MLNP12872 115 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 RPL17P18621 184 aaKnown RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 HTR7P34969 479 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 TBX4P57082 545 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 NRG1Q02297 640 aaPredicted RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 ZBTB17Q13105 803 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 USP41Q3LFD5 358 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 KBTBD12Q3ZCT8 623 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 PIK3R6Q5UE93 754 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 SLC8B1Q6J4K2 584 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 LRRC8BQ6P9F7 803 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 UNC5AQ6ZN44 842 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 GIPC2Q8TF65 315 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 C2orf15Q8WU43 125 aaKnown RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 TBC1D31Q96DN5 1066 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 C1orf74Q96LT6 269 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 ZNF317Q96PQ6 595 aaPredicted RBP17.41■□□□□ 0.38
DDX41-201ENST00000330503 TRABDQ9H4I3 376 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 CCDC134Q9H6E4 229 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 KIF9Q9HAQ2 790 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 COMMD8Q9NX08 183 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 MTRRQ9UBK8 725 aa17.41■□□□□ 0.38
DDX41-201ENST00000330503 ZNF189O75820 626 aaPredicted RBP17.4■□□□□ 0.38
DDX41-201ENST00000330503 ITGB8P26012 769 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 MSH2P43246 934 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 TUBP50607 506 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 EFEMP1Q12805 493 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 LRRC14Q15048 493 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 ARHGAP36Q6ZRI8 547 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 TMCO2Q7Z6W1 182 aaPredicted RBP17.4■□□□□ 0.38
DDX41-201ENST00000330503 MGARPQ8TDB4 240 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 TOP1MTQ969P6 601 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 NDFIP2Q9NV92 336 aa17.4■□□□□ 0.38
DDX41-201ENST00000330503 KLHL8Q9P2G9 620 aaPredicted RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms