RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 ARNT2Q9HBZ2 717 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 PDGFCQ9NRA1 345 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.07□□□□□ -1.12
CNOT4-201ENST00000315544 ARHGEF38Q9NXL2 777 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 SORCS3Q9UPU3 1222 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 SPEGQ15772 3267 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 TRIM43BA6NCK2 446 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 MROH6A6NGR9 719 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 WASH4PA8MWX3 477 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 UBFD1O14562 309 aaKnown RBP8.07□□□□□ -1.12
CNOT4-201ENST00000315544 AXIN1O15169 862 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 ACOX3O15254 700 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 KRT36O76013 467 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 C1RP00736 705 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 APOEP02649 317 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 SSBP05455 408 aaKnown RBP eCLIP8.07□□□□□ -1.12
CNOT4-201ENST00000315544 CXCL8P10145 99 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 YWHAEP62258 255 aaKnown RBP8.07□□□□□ -1.12
CNOT4-201ENST00000315544 PDE4CQ08493 712 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 RIPOR1Q6ZS17 1223 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 TBC1D1Q86TI0 1168 aaPredicted RBP8.07□□□□□ -1.12
CNOT4-201ENST00000315544 TRIM43Q96BQ3 446 aaPredicted RBP8.07□□□□□ -1.12
CNOT4-201ENST00000315544 TMEM120AQ9BXJ8 343 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 ITGA11Q9UKX5 1188 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 VWA7Q9Y334 891 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 CEP83Q9Y592 693 aa8.07□□□□□ -1.12
CNOT4-201ENST00000315544 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.07□□□□□ -1.12
CNOT4-201ENST00000315544 RANBP2P49792 3224 aaKnown RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 UPK1AO00322 258 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 SPAG7O75391 227 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 IL18RAPO95256 599 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 IGLV3-27P01718 113 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 ZNF33AQ06730 810 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 GPS1Q13098 491 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 LRP8Q14114 963 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KIAA0040Q15053 153 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 HIF1AQ16665 826 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KCNT1Q5JUK3 1230 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 TCERG1LQ5VWI1 586 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 EMC1Q8N766 993 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 C12orf29Q8N999 325 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 PAPD5Q8NDF8 572 aaKnown RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 HERVK_113Q902F9 699 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CFAP57Q96MR6 1250 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 TBCBQ99426 244 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CNPY3Q9BT09 278 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 DCLRE1BQ9H816 532 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 MANSC1Q9H8J5 431 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 MLXIPLQ9NP71 852 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 TMPRSS4Q9NRS4 437 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KIAA1522Q9P206 1035 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 BARX2Q9UMQ3 279 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 SSX2IPQ9Y2D8 614 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 TCRBV5S2A0A599 114 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 MATN2O00339 956 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 SLC22A2O15244 555 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 ATP9BO43861 1147 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KLK8O60259 260 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 EN2P19622 333 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 WARSP23381 471 aaKnown RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 LIG4P49917 911 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 DNA2P51530 1060 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 HTRA4P83105 476 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 MYBPC1Q00872 1141 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CDC16Q13042 620 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 LSAMPQ13449 338 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KPNB1Q14974 876 aaKnown RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 STILQ15468 1287 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 GSTA3Q16772 222 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 STRADAQ7RTN6 431 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 GPRIN1Q7Z2K8 1008 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CARM1Q86X55 608 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 APLFQ8IW19 511 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 C4orf33Q8N1A6 199 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 NME8Q8N427 588 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 TEX26Q8N6G2 289 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KDM1BQ8NB78 822 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 C3orf58Q8NDZ4 430 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 FAM110BQ8TC76 370 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 GDPD5Q8WTR4 605 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CDHR1Q96JP9 859 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 C1QTNF3Q9BXJ4 246 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 FTHL17Q9BXU8 183 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 C11orf49Q9H6J7 331 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 PLEKHA5Q9HAU0 1116 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 IGSF5Q9NSI5 407 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 MTF2Q9Y483 593 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CCL27Q9Y4X3 112 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 IGLV3-10A0A075B6K4 115 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 MAP3K7O43318 606 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 SPAG6O75602 509 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 MMP3P08254 477 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 SLC35E2BP0CK96 405 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 AKR1A1P14550 325 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 ATP2A2P16615 1042 aaKnown RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CDC25CP30307 473 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 RNF165Q6ZSG1 346 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CCDC121Q6ZUS5 278 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 PHTF2Q8N3S3 785 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms