RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PAGE1O75459 146 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 PTPN3P26045 913 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 EFEMP1Q12805 493 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 TTC31Q49AM3 519 aaPredicted RBP11.79□□□□□ -0.52
CUX1-202ENST00000292538 CERCAMQ5T4B2 595 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 C4orf50Q6ZRC1 276 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 BHLHA9Q7RTU4 235 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 TBC1D1Q86TI0 1168 aaPredicted RBP11.79□□□□□ -0.52
CUX1-202ENST00000292538 PACS2Q86VP3 889 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 NDUFAF2Q8N183 169 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 SPATA22Q8NHS9 363 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 GSDMBQ8TAX9 411 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 GIPC2Q8TF65 315 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 CCT6BQ92526 530 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 NDFIP2Q9NV92 336 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 SENP1Q9P0U3 644 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 TRIM17Q9Y577 477 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 C2orf71A6NGG8 1288 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 ARHGAP42A6NI28 874 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 F9P00740 461 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 SNRPAP09012 282 aaKnown RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 SKIP12755 728 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 NFKB1P19838 968 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 BGNP21810 368 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 USP46P62068 366 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 PDE1BQ01064 536 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 ITKQ08881 620 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 VARS2Q5ST30 1063 aaKnown RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 TTC39BQ5VTQ0 682 aaPredicted RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 CGB2Q6NT52 195 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 ZNF598Q86UK7 904 aaKnown RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 DENND1AQ8TEH3 1009 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 PTPRN2Q92932 1015 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 AZIN2Q96A70 460 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 GPR62Q9BZJ7 368 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 RGS18Q9NS28 235 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 OSER1Q9NX31 292 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 VANGL2Q9ULK5 521 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 SCN10AQ9Y5Y9 1956 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 M0QZQ0 153 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 PRPF4O43172 522 aaKnown RBP eCLIP11.78□□□□□ -0.523e-6■■□□□ 11.6
CUX1-202ENST00000292538 OPHN1O60890 802 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 MT-CYBP00156 380 aaPredicted RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 TUBP50607 506 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 PGGT1BP53609 377 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 SEMA5AQ13591 1074 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 MAPRE1Q15691 268 aaKnown RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 C16orf46Q6P387 395 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 LRRC8DQ7L1W4 858 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 RPAINQ86UA6 219 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 BANPQ8N9N5 519 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 SRPK1Q96SB4 655 aaKnown RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 CCDC134Q9H6E4 229 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 XAB2Q9HCS7 855 aaKnown RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 MARCOQ9UEW3 520 aaPredicted RBP11.78□□□□□ -0.52
CUX1-202ENST00000292538 TRIM33Q9UPN9 1127 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 PSAT1Q9Y617 370 aa11.78□□□□□ -0.52
CUX1-202ENST00000292538 NUP205Q92621 2012 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 HACD1B0YJ81 288 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 CABYRO75952 493 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 RPL17P18621 184 aaKnown RBP11.77□□□□□ -0.52
CUX1-202ENST00000292538 FDFT1P37268 417 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 ACTN3Q08043 901 aaPredicted RBP11.77□□□□□ -0.52
CUX1-202ENST00000292538 PRKD1Q15139 912 aaPredicted RBP11.77□□□□□ -0.52
CUX1-202ENST00000292538 PCSK7Q16549 785 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 PARP6Q2NL67 630 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 LGSNQ5TDP6 509 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 LHX8Q68G74 356 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 ZNF296Q8WUU4 475 aaPredicted RBP11.77□□□□□ -0.52
CUX1-202ENST00000292538 ZNF669Q96BR6 464 aaPredicted RBP11.77□□□□□ -0.52
CUX1-202ENST00000292538 DEFB118Q96PH6 123 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 MANSC1Q9H8J5 431 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 CSNK1G1Q9HCP0 422 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 GMIPQ9P107 970 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 ZFATQ9P243 1243 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 STK38LQ9Y2H1 464 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 ARL2BPQ9Y2Y0 163 aa11.77□□□□□ -0.52
CUX1-202ENST00000292538 TTC24A2A3L6 582 aaPredicted RBP11.77□□□□□ -0.53
CUX1-202ENST00000292538 TBKBP1A7MCY6 615 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 SCAMP3O14828 347 aaKnown RBP11.77□□□□□ -0.53
CUX1-202ENST00000292538 ZWINTO95229 277 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 CCR1P32246 355 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 CXCR3P49682 368 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 MTFR1Q15390 333 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 ZNF449Q6P9G9 518 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 ZCCHC23Q6ZST2 131 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 TMCO2Q7Z6W1 182 aaPredicted RBP11.77□□□□□ -0.53
CUX1-202ENST00000292538 SCD5Q86SK9 330 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 RASSF3Q86WH2 238 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 FITM2Q8N6M3 262 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 IPMKQ8NFU5 416 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 MFSD3Q96ES6 412 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 ZNF395Q9H8N7 513 aaPredicted RBP11.77□□□□□ -0.53
CUX1-202ENST00000292538 RCOR3Q9P2K3 495 aaPredicted RBP11.77□□□□□ -0.53
CUX1-202ENST00000292538 PCDHA11Q9Y5I1 949 aa11.77□□□□□ -0.53
CUX1-202ENST00000292538 NBNO60934 754 aa11.76□□□□□ -0.53
CUX1-202ENST00000292538 PMPCBO75439 489 aa11.76□□□□□ -0.53
CUX1-202ENST00000292538 KRT38O76015 456 aa11.76□□□□□ -0.53
CUX1-202ENST00000292538 ALDH2P05091 517 aa11.76□□□□□ -0.53
CUX1-202ENST00000292538 CYP11A1P05108 521 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms