RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 STRADAQ7RTN6 431 aa17.33■□□□□ 0.37
SDCBP-201ENST00000260130 CHSY1Q86X52 802 aa17.33■□□□□ 0.37
SDCBP-201ENST00000260130 PRMT1Q99873 361 aaKnown RBP17.33■□□□□ 0.37
SDCBP-201ENST00000260130 CNOT8Q9UFF9 292 aaKnown RBP17.33■□□□□ 0.37
SDCBP-201ENST00000260130 CLEC4EQ9ULY5 219 aa17.33■□□□□ 0.37
SDCBP-201ENST00000260130 TYW5A2RUC4 315 aaKnown RBP17.33■□□□□ 0.36
SDCBP-201ENST00000260130 ATMINO43313 823 aaPredicted RBP17.33■□□□□ 0.36
SDCBP-201ENST00000260130 LAMTOR5O43504 91 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 TBL1XO60907 577 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 ATG13O75143 517 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 PAGE1O75459 146 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 SASH3O75995 380 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 MYBL1P10243 752 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 MAPK8IP2Q13387 824 aaPredicted RBP17.33■□□□□ 0.36
SDCBP-201ENST00000260130 ANGPT1Q15389 498 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 SH3PXD2AQ5TCZ1 1133 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 ALKBH5Q6P6C2 394 aaKnown RBP17.33■□□□□ 0.36
SDCBP-201ENST00000260130 LGI2Q8N0V4 545 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 HJURPQ8NCD3 748 aaPredicted RBP17.33■□□□□ 0.36
SDCBP-201ENST00000260130 PRSS33Q8NF86 280 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 CENPIQ92674 756 aaPredicted RBP17.33■□□□□ 0.36
SDCBP-201ENST00000260130 ZNF653Q96CK0 615 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 MYEOVQ96EZ4 313 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 PRICKLE1Q96MT3 831 aaPredicted RBP17.33■□□□□ 0.36
SDCBP-201ENST00000260130 ANLNQ9NQW6 1124 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 SLC27A6Q9Y2P4 619 aa17.33■□□□□ 0.36
SDCBP-201ENST00000260130 SSU72P8A0A1W2PR75 194 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 F5H5T6 163 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 ZNF143P52747 638 aaPredicted RBP17.32■□□□□ 0.36
SDCBP-201ENST00000260130 SEC13P55735 322 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 RPS24P62847 133 aaKnown RBP17.32■□□□□ 0.36
SDCBP-201ENST00000260130 CCDC122Q5T0U0 273 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 RPLP0P6Q8NHW5 317 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 HNRNPLLQ8WVV9 542 aaKnown RBP17.32■□□□□ 0.36
SDCBP-201ENST00000260130 FUT8Q9BYC5 575 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.32■□□□□ 0.36
SDCBP-201ENST00000260130 STIM2Q9P246 746 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 CHURC1-FNTBB4DL54 471 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 POLR3GO15318 223 aaPredicted RBP17.32■□□□□ 0.36
SDCBP-201ENST00000260130 OAS2P29728 719 aaKnown RBP17.32■□□□□ 0.36
SDCBP-201ENST00000260130 CCR3P51677 355 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 LONRF2Q1L5Z9 754 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 C2orf27AQ580R0 203 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 C10orf76Q5T2E6 689 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 RNF43Q68DV7 783 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 PKN3Q6P5Z2 889 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 FAM131BQ86XD5 332 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 MAML2Q8IZL2 1156 aaPredicted RBP17.32■□□□□ 0.36
SDCBP-201ENST00000260130 USP33Q8TEY7 942 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 FAM172AQ8WUF8 416 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 CHP1Q99653 195 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 NAPGQ99747 312 aaPredicted RBP17.32■□□□□ 0.36
SDCBP-201ENST00000260130 SIK2Q9H0K1 926 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 DEF6Q9H4E7 631 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 HS3ST4Q9Y661 456 aa17.32■□□□□ 0.36
SDCBP-201ENST00000260130 ANTXRLA6NF34 631 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 ERICH4A6NGS2 130 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 I6L893 689 aaPredicted RBP17.31■□□□□ 0.36
SDCBP-201ENST00000260130 ERLIN1O75477 346 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 KIR2DL1P43626 348 aaPredicted RBP17.31■□□□□ 0.36
SDCBP-201ENST00000260130 CXCL12P48061 93 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 MRPS21P82921 87 aaKnown RBP17.31■□□□□ 0.36
SDCBP-201ENST00000260130 GFPT1Q06210 699 aaPredicted RBP17.31■□□□□ 0.36
SDCBP-201ENST00000260130 TCF15Q12870 199 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 GPS2Q13227 327 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 AUHQ13825 339 aaKnown RBP17.31■□□□□ 0.36
SDCBP-201ENST00000260130 SLC18A3Q16572 532 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 WHAMMP3Q1A5X7 153 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 ASTE1Q2TB18 679 aaPredicted RBP17.31■□□□□ 0.36
SDCBP-201ENST00000260130 RAB6CQ53S08 254 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 EMC10Q5UCC4 262 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 CFAP52Q8N1V2 620 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 CNPY3Q9BT09 278 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 RAB6CQ9H0N0 254 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 MRPL47Q9HD33 250 aaKnown RBP17.31■□□□□ 0.36
SDCBP-201ENST00000260130 RAPGEFL1Q9UHV5 662 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 STARD13Q9Y3M8 1113 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 SCINQ9Y6U3 715 aa17.31■□□□□ 0.36
SDCBP-201ENST00000260130 TMEM191CA6NGB0 347 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 PRRT4C9JH25 899 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 HDAC4P56524 1084 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 ACBD5Q5T8D3 534 aaPredicted RBP17.3■□□□□ 0.36
SDCBP-201ENST00000260130 FBXL22Q6P050 247 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 SLC35F6Q8N357 371 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 ZNF557Q8N988 423 aaPredicted RBP17.3■□□□□ 0.36
SDCBP-201ENST00000260130 KCNV2Q8TDN2 545 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 C1orf74Q96LT6 269 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 CCDC42Q96M95 316 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 HAPLN3Q96S86 360 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 NHEJ1Q9H9Q4 299 aaPredicted RBP17.3■□□□□ 0.36
SDCBP-201ENST00000260130 FBXO4Q9UKT5 387 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 NENFQ9UMX5 172 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 H0Y858 1186 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 AKR1B10O60218 316 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 TUBBP07437 444 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 TIE1P35590 1138 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 SATB1Q01826 763 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 GEN1Q17RS7 908 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 ARL13BQ3SXY8 428 aa17.3■□□□□ 0.36
SDCBP-201ENST00000260130 RABGAP1LQ5R372 815 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms