RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 A0A1W2PQ27 194 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 A0A1W2PQ64 194 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 A0A1W2PQD8 194 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 GTPBP10A4D1E9 387 aaKnown RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 M0R3G1 203 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 OR10H2O60403 315 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 KCNA2P16389 499 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 CYP2A7P20853 494 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 P4HA3Q7Z4N8 544 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 GALNT13Q8IUC8 556 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 CENPSQ8N2Z9 138 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 TTC29Q8NA56 475 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 SPDL1Q96EA4 605 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 P2RY13Q9BPV8 354 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 PXDNQ92626 1479 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 LACTBL1A8MY62 500 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 NUP62P37198 522 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 EIF4A3P38919 411 aaKnown RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 RGS1Q08116 209 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 CNTN1Q12860 1018 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 GNA13Q14344 377 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 LRRC23Q53EV4 343 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 SH3D19Q5HYK7 790 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 TEDDM1Q5T9Z0 273 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 ECHDC2Q86YB7 292 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 SNIP1Q8TAD8 396 aaKnown RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 PPP1R14AQ96A00 147 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 ADAMTS10Q9H324 1103 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 FAM96AQ9H5X1 160 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 LDAHQ9H6V9 325 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 COPG2Q9UBF2 871 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 RPS6KB2Q9UBS0 482 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 PACSIN2Q9UNF0 486 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 TOPAZ1Q8N9V7 1692 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KRT37O76014 449 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KRT16P08779 473 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF24P17028 368 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TGM2P21980 687 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 PTPN9P43378 593 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MUM1Q2TAK8 710 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 Q4G0T1 1027 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 VARS2Q5ST30 1063 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 LDLRAD1Q5T700 205 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ZDHHC17Q8IUH5 632 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CD101Q93033 1021 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CLIP3Q96DZ5 547 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TOX2Q96NM4 488 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CDH19Q9H159 772 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 SYTL2Q9HCH5 934 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 WWOXQ9NZC7 414 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CDC14AQ9UNH5 594 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KERAO60938 352 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KRT14P02533 472 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ATP6V1C1P21283 382 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 NDUFA8P51970 172 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ARL4CP56559 192 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 EIF3EP60228 445 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MC1RQ01726 317 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KLHL40Q2TBA0 621 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CCDC92Q53HC0 331 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF776Q68DI1 518 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 C17orf99Q6UX52 265 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 SETD3Q86TU7 594 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MB21D2Q8IYB1 491 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 LHX5Q9H2C1 402 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 RIOX1Q9H6W3 641 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TMEM134Q9H6X4 195 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 NT5MQ9NPB1 228 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 IMPACTQ9P2X3 320 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF609O15014 1411 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MIF4GDA9UHW6 222 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KPNA5O15131 536 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 SLC16A3O15427 465 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KCNN4O15554 427 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KRT38O76015 456 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 APBB3O95704 486 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 LTFP02788 710 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 FTLP02792 175 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 FXR2P51116 673 aaKnown RBP eCLIP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TROAPQ12815 778 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 PAOXQ6QHF9 649 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MYO1HQ8N1T3 1032 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TRIM4Q9C037 500 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 PALMDQ9NP74 551 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 NSMCE4AQ9NXX6 385 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 VPS18Q9P253 973 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 TRIM10Q9UDY6 481 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 RGS17Q9UGC6 210 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 IQANK1A0A1B0GTG1 560 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CCNDBP1O95273 360 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 MT-ND3P03897 115 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 ADH5P11766 374 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 CYP24A1Q07973 514 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 FOXD4Q12950 439 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 DYNC1I2Q13409 638 aaKnown RBP5.14□□□□□ -1.59
SCN1A-218ENST00000640036 GRM2Q14416 872 aa5.14□□□□□ -1.59
SCN1A-218ENST00000640036 KLHL24Q6TFL4 600 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms