RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 GJB6O95452 261 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 PENKP01210 267 aaPredicted RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 APOEP02649 317 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 CISD3P0C7P0 127 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 SP9P0CG40 484 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 TFE3P19532 575 aaPredicted RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 SLC6A4P31645 630 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 FLT3P36888 993 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 CXCL12P48061 93 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 SULT1E1P49888 294 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 CCR3P51677 355 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 SGSHP51688 502 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 SATB1Q01826 763 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 PREPLQ4J6C6 727 aaPredicted RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 MPPE1Q53F39 396 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 FAM133BQ5BKY9 247 aaKnown RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 EMC10Q5UCC4 262 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 OTUD1Q5VV17 481 aaPredicted RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 GRAMD4Q6IC98 578 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 PLEKHA7Q6IQ23 1121 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 TRNP1Q6NT89 227 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 TSSK4Q6SA08 328 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 MAMSTRQ6ZN01 415 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 EMC1Q8N766 993 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 TRIM58Q8NG06 486 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 RPLP0P6Q8NHW5 317 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 FNIP1Q8TF40 1166 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 ATOH1Q92858 354 aaPredicted RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 TMA16Q96EY4 203 aaKnown RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 NPY6RQ99463 290 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 ADAM33Q9BZ11 813 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 LACRTQ9GZZ8 138 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 PRMT8Q9NR22 394 aaPredicted RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 POLR3BQ9NW08 1133 aaPredicted RBP10.22□□□□□ -0.77
CLN3-261ENST00000637686 TMEM51Q9NW97 253 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 CALCOCO1Q9P1Z2 691 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 TMEM59LQ9UK28 342 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 FBXO10Q9UK96 956 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 CLEC4EQ9ULY5 219 aa10.22□□□□□ -0.77
CLN3-261ENST00000637686 CACNA1IQ9P0X4 2223 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 TCRBV5S1A1TA0A578 114 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 USP27XA6NNY8 438 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 KCNU1A8MYU2 1149 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 GFRA2O00451 464 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 KIF5CO60282 957 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 TBL1XO60907 577 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 ATG13O75143 517 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 SLC2A3P11169 496 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 ABCB4P21439 1286 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 HOXD9P28356 352 aaPredicted RBP10.21□□□□□ -0.77
CLN3-261ENST00000637686 CCR1P32246 355 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 TIE1P35590 1138 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 TNFRSF4P43489 277 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 DGKGP49619 791 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 ATXN1P54253 815 aaKnown RBP10.21□□□□□ -0.77
CLN3-261ENST00000637686 ETF1P62495 437 aaKnown RBP10.21□□□□□ -0.77
CLN3-261ENST00000637686 NHLH1Q02575 133 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 DEUP1Q05D60 604 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 SLC25A52Q3SY17 297 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 C2orf27AQ580R0 203 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 PIK3R6Q5UE93 754 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 RAP1GAP2Q684P5 730 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 DNAAF5Q86Y56 855 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 SYCE1Q8N0S2 351 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 ATP6V0D2Q8N8Y2 350 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 TERB1Q8NA31 727 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 JOSD2Q8TAC2 188 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 USP33Q8TEY7 942 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 ZNF653Q96CK0 615 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 MYEOVQ96EZ4 313 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 BTN2A3PQ96KV6 586 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 CFAP57Q96MR6 1250 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 ALS2CR12Q96Q35 445 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 TBCBQ99426 244 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 DDX50Q9BQ39 737 aaKnown RBP10.21□□□□□ -0.77
CLN3-261ENST00000637686 SELENOOQ9BVL4 669 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 PACSIN1Q9BY11 444 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 IRF2BPLQ9H1B7 796 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 PIGVQ9NUD9 493 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 PARVAQ9NVD7 372 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 FAM86C1Q9NVL1 165 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.21□□□□□ -0.77
CLN3-261ENST00000637686 TRMT1Q9NXH9 659 aaKnown RBP10.21□□□□□ -0.77
CLN3-261ENST00000637686 RRN3Q9NYV6 651 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 CNOT8Q9UFF9 292 aaKnown RBP10.21□□□□□ -0.77
CLN3-261ENST00000637686 SLC12A6Q9UHW9 1150 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 FBXO4Q9UKT5 387 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 STAP1Q9ULZ2 295 aa10.21□□□□□ -0.77
CLN3-261ENST00000637686 KIAA1549LQ6ZVL6 1849 aa10.21□□□□□ -0.78
CLN3-261ENST00000637686 SIGLEC16A6NMB1 481 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 CHURC1-FNTBB4DL54 471 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 PRRT4C9JH25 899 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 CHRM1P11229 460 aaPredicted RBP10.2□□□□□ -0.78
CLN3-261ENST00000637686 KRT3P12035 628 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 TDGF1P13385 188 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 PDGFRAP16234 1089 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 RRM1P23921 792 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 HOXC13P31276 330 aa10.2□□□□□ -0.78
CLN3-261ENST00000637686 KIR2DL1P43626 348 aaPredicted RBP10.2□□□□□ -0.78
CLN3-261ENST00000637686 RPS24P62847 133 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms