RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PPM1LQ5SGD2 360 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 STXBP5Q5T5C0 1151 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 PPP2R2DQ66LE6 453 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 ITIH5Q86UX2 942 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 GRK7Q8WTQ7 553 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 EPAS1Q99814 870 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 VANGL2Q9ULK5 521 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 SZT2Q5T011 3432 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 GAS8O95995 478 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 RBL1P28749 1068 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 CCR2P41597 374 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 HCAR3P49019 387 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 TUBP50607 506 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 ZXDBP98169 803 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 MANEALQ5VSG8 457 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 NADSYN1Q6IA69 706 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 ZDHHC24Q6UX98 284 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 ARL14EPQ8N8R7 260 aaPredicted RBP20.75■□□□□ 0.91
CLN3-250ENST00000636839 AENQ8WTP8 325 aaKnown RBP20.75■□□□□ 0.91
CLN3-250ENST00000636839 LGMNQ99538 433 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 USP29Q9HBJ7 922 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 NDFIP2Q9NV92 336 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 ARGLU1Q9NWB6 273 aaPredicted RBP20.75■□□□□ 0.91
CLN3-250ENST00000636839 E9PAM4 449 aa20.74■□□□□ 0.91
CLN3-250ENST00000636839 APOEP02649 317 aa20.74■□□□□ 0.91
CLN3-250ENST00000636839 KLKB1P03952 638 aa20.74■□□□□ 0.91
CLN3-250ENST00000636839 TNFRSF8P28908 595 aa20.74■□□□□ 0.91
CLN3-250ENST00000636839 NNTQ13423 1086 aa20.74■□□□□ 0.91
CLN3-250ENST00000636839 RAP1GAP2Q684P5 730 aa20.74■□□□□ 0.91
CLN3-250ENST00000636839 FEZ2Q9UHY8 353 aaPredicted RBP20.74■□□□□ 0.91
CLN3-250ENST00000636839 ANAPC1Q9H1A4 1944 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 A0A1W2PRU2 124 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 TUBBP07437 444 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 IRF1P10914 325 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 SLC2A3P11169 496 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 MYL4P12829 197 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 ZFXP17010 805 aaPredicted RBP20.73■□□□□ 0.91
CLN3-250ENST00000636839 ADCY8P40145 1251 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 PLTPP55058 493 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 AUHQ13825 339 aaKnown RBP20.73■□□□□ 0.91
CLN3-250ENST00000636839 TMCO3Q6UWJ1 677 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 ZNF683Q8IZ20 524 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 ZNF276Q8N554 614 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 TTC16Q8NEE8 873 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 RSAD2Q8WXG1 361 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 CELF6Q96J87 481 aaKnown RBP20.73■□□□□ 0.91
CLN3-250ENST00000636839 ZDHHC18Q9NUE0 388 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 UXTQ9UBK9 157 aaPredicted RBP20.73■□□□□ 0.91
CLN3-250ENST00000636839 ASB3Q9Y575 518 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 MCM3P25205 808 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 PAFAH1B3Q15102 231 aaKnown RBP20.73■□□□□ 0.91
CLN3-250ENST00000636839 MAB21L3Q8N8X9 362 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 FBXO25Q8TCJ0 367 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 HNRNPLLQ8WVV9 542 aaKnown RBP20.73■□□□□ 0.91
CLN3-250ENST00000636839 RUBCNQ92622 972 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 IGSF8Q969P0 613 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 TCEAL4Q96EI5 215 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 BTN2A3PQ96KV6 586 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 SAMD11Q96NU1 681 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 OLFM3Q96PB7 478 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 FRMD8P1Q9BZ68 369 aaPredicted RBP20.73■□□□□ 0.91
CLN3-250ENST00000636839 ARFGAP3Q9NP61 516 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 MSRAQ9UJ68 235 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 HCFC2Q9Y5Z7 792 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 PDE4DIPQ5VU43 2346 aa20.73■□□□□ 0.91
CLN3-250ENST00000636839 CNTN5O94779 1100 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 NTHL1P78549 312 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 CUL1Q13616 776 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 FBXL22Q6P050 247 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 KLHDC10Q6PID8 442 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 CIR1Q86X95 450 aaPredicted RBP20.72■□□□□ 0.91
CLN3-250ENST00000636839 DENND1CQ8IV53 801 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 DEPDC1BQ8WUY9 529 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 ZFRQ96KR1 1074 aaKnown RBP20.72■□□□□ 0.91
CLN3-250ENST00000636839 C1orf74Q96LT6 269 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 CDK5RAP1Q96SZ6 601 aaKnown RBP20.72■□□□□ 0.91
CLN3-250ENST00000636839 KLF16Q9BXK1 252 aaPredicted RBP20.72■□□□□ 0.91
CLN3-250ENST00000636839 KLC2Q9H0B6 622 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 ATXN3LQ9H3M9 355 aa20.72■□□□□ 0.91
CLN3-250ENST00000636839 DNMT3BQ9UBC3 853 aaKnown RBP20.72■□□□□ 0.91
CLN3-250ENST00000636839 HBS1LQ9Y450 684 aaKnown RBP20.72■□□□□ 0.91
CLN3-250ENST00000636839 TRDMT1O14717 391 aaKnown RBP20.71■□□□□ 0.91
CLN3-250ENST00000636839 KCNN4O15554 427 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 STC2O76061 302 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 MBL2P11226 248 aaPredicted RBP20.71■□□□□ 0.91
CLN3-250ENST00000636839 VAV1P15498 845 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 RPL22P35268 128 aaKnown RBP20.71■□□□□ 0.91
CLN3-250ENST00000636839 NR2C2P49116 596 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 DRG2P55039 364 aaKnown RBP20.71■□□□□ 0.91
CLN3-250ENST00000636839 LMNB2Q03252 620 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 RING1Q06587 406 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 GPS1Q13098 491 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 P3H1Q32P28 736 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 ALFQ53S48 1182 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 RFWD3Q6PCD5 774 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 ATP6V0D2Q8N8Y2 350 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 PWWP2AQ96N64 755 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 PRMT1Q99873 361 aaKnown RBP20.71■□□□□ 0.91
CLN3-250ENST00000636839 ADAM7Q9H2U9 754 aa20.71■□□□□ 0.91
CLN3-250ENST00000636839 SLC28A3Q9HAS3 691 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms