RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 KLC2Q9H0B6 622 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 NEUROG2Q9H2A3 272 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 PABPC3Q9H361 631 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 CYP4F11Q9HBI6 524 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 TRPM5Q9NZQ8 1165 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 OGFRQ9NZT2 677 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 COX16Q9P0S2 106 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 ANAPC5Q9UJX4 755 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 TPX2Q9ULW0 747 aaKnown RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 COLQQ9Y215 455 aaPredicted RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 SLC27A5Q9Y2P5 690 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 FARP1Q9Y4F1 1045 aaPredicted RBP10.91□□□□□ -0.66
CLN3-248ENST00000636355 HEY1Q9Y5J3 304 aa10.91□□□□□ -0.66
CLN3-248ENST00000636355 ATG2AQ2TAZ0 1938 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 LINC01553A4QN01 128 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 ZNF840PA6NDX5 716 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 SOBPA7XYQ1 873 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 SEC24AO95486 1093 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 OAS1P00973 400 aaKnown RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 IFNB1P01574 187 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 FAM153BP0C7A2 387 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 ERCC2P18074 760 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 RPL17P18621 184 aaKnown RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 AMPD1P23109 780 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 EPHB2P29323 1055 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 ATP5C1P36542 298 aaKnown RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 ITGA8P53708 1063 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 CDK16Q00536 496 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 GBE1Q04446 702 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 PPIDQ08752 370 aaKnown RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 GALNT2Q10471 571 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 GPS1Q13098 491 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 TRADDQ15628 312 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 TAF12Q16514 161 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 FAM153CQ494X1 144 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 HECTD3Q5T447 861 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 ELMSAN1Q6PJG2 1045 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 CNPY4Q8N129 248 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 RTL3Q8N8U3 475 aaKnown RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 FAM71DQ8N9W8 422 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 KLHL23Q8NBE8 558 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 ZNF512Q96ME7 567 aaPredicted RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 PPCSQ9HAB8 311 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 USP29Q9HBJ7 922 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 EIF2B3Q9NR50 452 aaKnown RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 TLR9Q9NR96 1032 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 SAE1Q9UBE0 346 aaPredicted RBP10.9□□□□□ -0.66
CLN3-248ENST00000636355 FAM153AQ9UHL3 310 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 DPP7Q9UHL4 492 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 ZMYM5Q9UJ78 669 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 SHROOM3Q8TF72 1996 aa10.9□□□□□ -0.66
CLN3-248ENST00000636355 A0A0A0MRY4 1105 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 KCNN4O15554 427 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 MSI1O43347 362 aaKnown RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 OPA1O60313 960 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 LPXNO60711 386 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 SOAT2O75908 522 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 OLFM2O95897 454 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 GLUD1P00367 558 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 ABHD2P08910 425 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 CNPP09543 421 aaKnown RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 TSHRP16473 764 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 RHOQP17081 205 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 TPSB2P20231 275 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 RPL22P35268 128 aaKnown RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 FDFT1P37268 417 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 PMS2P54278 862 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 GDF10P55107 478 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 MLLT6P55198 1093 aaPredicted RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 DHX9Q08211 1270 aaKnown RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 EFEMP1Q12805 493 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 TPSAB1Q15661 275 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 TTC39BQ5VTQ0 682 aaPredicted RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 LILRA6Q6PI73 481 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 C1orf228Q6PIY5 440 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 NPNTQ6UXI9 565 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 LRRC31Q6UY01 552 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 ZC3H18Q86VM9 953 aaKnown RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 IQCKQ8N0W5 287 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 ELMOD1Q8N336 334 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 LEMD2Q8NC56 503 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 HTR3CQ8WXA8 447 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 PRCCQ92733 491 aaPredicted RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 EXOC4Q96A65 974 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 SPATA13Q96N96 652 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 TSGA13Q96PP4 275 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 SH3GL2Q99962 352 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 FAM118BQ9BPY3 351 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 TCF25Q9BQ70 676 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 ADAM7Q9H2U9 754 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 PLEKHA4Q9H4M7 779 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 ANLNQ9NQW6 1124 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 ENTPD7Q9NQZ7 604 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 SFMBT1Q9UHJ3 866 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 TRHDEQ9UKU6 1024 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 PCDHA11Q9Y5I1 949 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 NR2E3Q9Y5X4 410 aa10.89□□□□□ -0.67
CLN3-248ENST00000636355 NYNRINQ9P2P1 1898 aaKnown RBP10.89□□□□□ -0.67
CLN3-248ENST00000636355 GOLGA6L10A6NI86 522 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms