RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 RNF146Q9NTX7 359 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ING3Q9NXR8 418 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 A0A096LPK6 155 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 FAM95CA0A1B0GW59 222 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 NCAM2O15394 837 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 BST1Q10588 318 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 PPIL2Q13356 520 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 EMC2Q15006 297 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 ALLCQ8N6M5 410 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 EMC1Q8N766 993 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 HOXC10Q9NYD6 342 aa9.11□□□□□ -0.95
VCL-206ENST00000623461 TRMT6Q9UJA5 497 aaKnown RBP9.11□□□□□ -0.95
VCL-206ENST00000623461 H7C0S8 307 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 PSMD12O00232 456 aaPredicted RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 SNRPB2P08579 225 aaKnown RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 DPYSL3Q14195 570 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 MZT2AQ6P582 158 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ZCCHC23Q6ZST2 131 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 KDELC2Q7Z4H8 507 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 RBM12BQ8IXT5 1001 aaKnown RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 SLC35C1Q96A29 364 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ASIC4Q96FT7 647 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 C3orf18Q9UK00 162 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 VANGL2Q9ULK5 521 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 TMED5Q9Y3A6 229 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 HACD1B0YJ81 288 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 MSH4O15457 936 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 IL6P05231 212 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 PRDX6P30041 224 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 RECQLP46063 649 aaPredicted RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 PRIM2P49643 509 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 NEK3P51956 506 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 NME5P56597 212 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 LPCAT4Q643R3 524 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 APPL2Q8NEU8 664 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ZHX1-C8orf76Q96EF9 292 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 MRPL48Q96GC5 212 aaKnown RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 PPP1R16BQ96T49 567 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 SLCO1B3Q9NPD5 702 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 GRAP2O75791 330 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ZNF682O95780 498 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 GUCA1CO95843 209 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 GCNT1Q02742 428 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 GALNTL6Q49A17 601 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 LRRC38Q5VT99 294 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 XRRA1Q6P2D8 792 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 TMC7Q7Z402 723 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ZNF605Q86T29 641 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 COLGALT1Q8NBJ5 622 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 RNF149Q8NC42 400 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ACSS3Q9H6R3 686 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 TBCCD1Q9NVR7 557 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 PIPSLA2A3N6 862 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ITGAVP06756 1048 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 CHKAP35790 457 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 KRT33BQ14525 404 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 TIGD7Q6NT04 549 aaPredicted RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 FIG4Q92562 907 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 RNFT2Q96EX2 444 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 TBCBQ99426 244 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 SLC4A5Q9BY07 1137 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 UBXN6Q9BZV1 441 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 MTIF3Q9H2K0 278 aaKnown RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 CYP4F12Q9HCS2 524 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 LGALS13Q9UHV8 139 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 TELO2Q9Y4R8 837 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 PCDHA11Q9Y5I1 949 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 KRT87PA6NCN2 255 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 FSCN2O14926 492 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ALOX15BO15296 676 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 CYP2C9P11712 490 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 UBAP2LQ14157 1087 aaKnown RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 RFX4Q33E94 735 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ZFP69Q49AA0 526 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 KIAA1841Q6NSI8 718 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ERI1Q8IV48 349 aaKnown RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 CYP4Z2PQ8N1L4 340 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 NLGN1Q8N2Q7 840 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ELMOD1Q8N336 334 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 GSTCDQ8NEC7 633 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 UBA3Q8TBC4 463 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 RDH11Q8TC12 318 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 MYDGFQ969H8 173 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 CGRRF1Q99675 332 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 LIASO43766 372 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 GABRB2P47870 512 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 CYP24A1Q07973 514 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 FGD2Q7Z6J4 655 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 ALYREFQ86V81 257 aaKnown RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 FAM228AQ86W67 206 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 CCDC167Q9P0B6 97 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 CEMIPQ8WUJ3 1361 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 APOC4-APOC2K7ER74 178 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 CD4P01730 458 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 APOC2P02655 101 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 RAP1GAPP47736 663 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 CDC42EP1Q00587 391 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 PTRHD1Q6GMV3 140 aaKnown RBP9.1□□□□□ -0.95
VCL-206ENST00000623461 DNAAF5Q86Y56 855 aa9.1□□□□□ -0.95
VCL-206ENST00000623461 DQX1Q8TE96 717 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms