RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CD2BP2O95400 341 aaKnown RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 LDOC1O95751 146 aaPredicted RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 ADH1BP00325 375 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 HLA-DRAP01903 254 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 KLKB1P03952 638 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 ITGAVP06756 1048 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 PABPC1P11940 636 aaKnown RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 ACTN2P35609 894 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 PSMC2P35998 433 aaKnown RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 NNMTP40261 264 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 CTSKP43235 329 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 ME1P48163 572 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 CASP4P49662 377 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 CCR5P51681 352 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 OXCT1P55809 520 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 CCDC15Q0P6D6 951 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 MTA1Q13330 715 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 ARID5BQ14865 1188 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 NFIL3Q16649 462 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 RAB41Q5JT25 222 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 CEP135Q66GS9 1140 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 ARHGAP17Q68EM7 881 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 KIAA0895LQ68EN5 471 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 KRT39Q6A163 491 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 PM20D1Q6GTS8 502 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 FAM173BQ6P4H8 233 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 DSG4Q86SJ6 1040 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 SCD5Q86SK9 330 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 FAM124AQ86V42 546 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 IQCHQ86VS3 1027 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 LSMEM2Q8N112 164 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 SIX6OS1Q8N1H7 587 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 ANKRD52Q8NB46 1076 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 GANCQ8TET4 914 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 WBP2Q969T9 261 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 AZIN2Q96A70 460 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 BIRC7Q96CA5 298 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 HEXIM2Q96MH2 286 aaKnown RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 SRRTQ9BXP5 876 aaKnown RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 GTPBP4Q9BZE4 634 aaKnown RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 SDCBP2Q9H190 292 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 SLC6A17Q9H1V8 727 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 TMEM245Q9H330 911 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 IL21RQ9HBE5 538 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 TMEM8AQ9HCN3 771 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 OSER1Q9NX31 292 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 TOR4AQ9NXH8 423 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.56□□□□□ -1.36
CUX1-220ENST00000607092 GGA2Q9UJY4 613 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 FZD4Q9ULV1 537 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 FLNCQ14315 2725 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 COL6A6A6NMZ7 2263 aa6.56□□□□□ -1.36
CUX1-220ENST00000607092 CELSR3Q9NYQ7 3312 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 ADAMTS9Q9P2N4 1935 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 A0A1W2PPC4 97 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 GOLGA8CPA6NN73 597 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 H0Y8X5 98 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 ENC1O14682 589 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 XPO1O14980 1071 aaKnown RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 MDM4O15151 490 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 SART1O43290 800 aaKnown RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 SRPRAP08240 638 aaKnown RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 HMBSP08397 361 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 SETSIPP0DME0 302 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 CD58P19256 250 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 NR2F2P24468 414 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 PRKCHP24723 683 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 HOXD9P28356 352 aaPredicted RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 CD38P28907 300 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 ACSL1P33121 698 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 AFMP43652 599 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 TKTL1P51854 596 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 RPS14P62263 151 aaKnown RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 E2F1Q01094 437 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 BNC1Q01954 994 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 BST2Q10589 180 aaKnown RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 RTP5Q14D33 572 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 STILQ15468 1287 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 CCDC157Q569K6 752 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 PPP1R26Q5T8A7 1209 aaPredicted RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 BROXQ5VW32 411 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 RNF219Q5W0B1 726 aaPredicted RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 RESP18Q5W5W9 173 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 MBLAC2Q68D91 279 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 SHC4Q6S5L8 630 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 CHST9Q7L1S5 443 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 GPRIN1Q7Z2K8 1008 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 ZNF605Q86T29 641 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 PIGZQ86VD9 579 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 FAM186BQ8IYM0 893 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 SCML4Q8N228 414 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 RBBP8NLQ8NC74 664 aaPredicted RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 HJURPQ8NCD3 748 aaPredicted RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 FBXL13Q8NEE6 735 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 OR2T34Q8NGX1 318 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 SNIP1Q8TAD8 396 aaKnown RBP6.55□□□□□ -1.36
CUX1-220ENST00000607092 PLEKHO2Q8TD55 490 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 IRGQQ8WZA9 623 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 FGF11Q92914 225 aa6.55□□□□□ -1.36
CUX1-220ENST00000607092 WBP1Q96G27 269 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms