RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 REXO2Q9Y3B8 237 aaKnown RBP20.01■□□□□ 0.79
UPF1-209ENST00000600310 COL4A3Q01955 1670 aa20■□□□□ 0.79
UPF1-209ENST00000600310 STK25O00506 426 aa20■□□□□ 0.79
UPF1-209ENST00000600310 PCK1P35558 622 aa20■□□□□ 0.79
UPF1-209ENST00000600310 AIF1P55008 147 aa20■□□□□ 0.79
UPF1-209ENST00000600310 RPS24P62847 133 aaKnown RBP20■□□□□ 0.79
UPF1-209ENST00000600310 SCAPQ12770 1279 aa20■□□□□ 0.79
UPF1-209ENST00000600310 UBXN2BQ14CS0 331 aa20■□□□□ 0.79
UPF1-209ENST00000600310 SLFN11Q7Z7L1 901 aa20■□□□□ 0.79
UPF1-209ENST00000600310 SUGP1Q8IWZ8 645 aaKnown RBP20■□□□□ 0.79
UPF1-209ENST00000600310 CCDC185Q8N715 623 aa20■□□□□ 0.79
UPF1-209ENST00000600310 FLCNQ8NFG4 579 aa20■□□□□ 0.79
UPF1-209ENST00000600310 PNKPQ96T60 521 aa20■□□□□ 0.79
UPF1-209ENST00000600310 OSBPL2Q9H1P3 480 aa20■□□□□ 0.79
UPF1-209ENST00000600310 DEC1Q9P2X7 70 aa20■□□□□ 0.79
UPF1-209ENST00000600310 LCMT1Q9UIC8 334 aa20■□□□□ 0.79
UPF1-209ENST00000600310 NDRG2Q9UN36 371 aaKnown RBP20■□□□□ 0.79
UPF1-209ENST00000600310 SNX10Q9Y5X0 201 aa20■□□□□ 0.79
UPF1-209ENST00000600310 F5P12259 2224 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 TYW5A2RUC4 315 aaKnown RBP19.99■□□□□ 0.79
UPF1-209ENST00000600310 FAM170BA6NMN3 283 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 GPR37L1O60883 481 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 TBL1XO60907 577 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 LRCH4O75427 683 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 CISD3P0C7P0 127 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 MIPP30301 263 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 GGCXP38435 758 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 CLCN5P51795 746 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 KRT83P78385 493 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 GRSF1Q12849 480 aaKnown RBP eCLIP19.99■□□□□ 0.79
UPF1-209ENST00000600310 C5orf22Q49AR2 442 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 FSTL4Q6MZW2 842 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 C14orf80Q86SX3 495 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 ZNF683Q8IZ20 524 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 PHTF2Q8N3S3 785 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 ACRBPQ8NEB7 543 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 PJA1Q8NG27 643 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 FAM122AQ96E09 287 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 PDLIM2Q96JY6 352 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 SLC2A11Q9BYW1 496 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 DNAJC17Q9NVM6 304 aaKnown RBP19.99■□□□□ 0.79
UPF1-209ENST00000600310 VANGL2Q9ULK5 521 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 FZD10Q9ULW2 581 aa19.99■□□□□ 0.79
UPF1-209ENST00000600310 MTF2Q9Y483 593 aaPredicted RBP19.99■□□□□ 0.79
UPF1-209ENST00000600310 A0A0A0MRY4 1105 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 FAM86C2PA6NEL3 165 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 CHRNB1P11230 501 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 DRD1P21728 446 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 NRG1Q02297 640 aaPredicted RBP19.98■□□□□ 0.79
UPF1-209ENST00000600310 FZD5Q13467 585 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 PREPLQ4J6C6 727 aaPredicted RBP19.98■□□□□ 0.79
UPF1-209ENST00000600310 RABGAP1LQ5R372 815 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 ARTNQ5T4W7 220 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 TTC39BQ5VTQ0 682 aaPredicted RBP19.98■□□□□ 0.79
UPF1-209ENST00000600310 GRAMD4Q6IC98 578 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 CFAP52Q8N1V2 620 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 IGSF8Q969P0 613 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 ARHGEF4Q9NR80 690 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 STIM2Q9P246 746 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 CLEC4EQ9ULY5 219 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 SLC27A6Q9Y2P4 619 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 SIT1Q9Y3P8 196 aa19.98■□□□□ 0.79
UPF1-209ENST00000600310 ARIH1Q9Y4X5 557 aaPredicted RBP19.98■□□□□ 0.79
UPF1-209ENST00000600310 IGLV3-10A0A075B6K4 115 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 A0A0A6YYK5 440 aaPredicted RBP19.97■□□□□ 0.79
UPF1-209ENST00000600310 RCCD1A6NED2 376 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 DRGXA6NNA5 263 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 NCAM2O15394 837 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 ARHGAP6O43182 974 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 PRPSAP2O60256 369 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 PROSCO94903 275 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 KAT7O95251 611 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 APODP05090 189 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 AOC1P19801 751 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 GRIA2P42262 883 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 ARHGAP25P42331 645 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 DGKGP49619 791 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 VAV2P52735 878 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 HADHBP55084 474 aaKnown RBP19.97■□□□□ 0.79
UPF1-209ENST00000600310 MESP2Q0VG99 397 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 CCINQ13939 588 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 EFHC2Q5JST6 749 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 DGKKQ5KSL6 1271 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 ASTLQ6HA08 431 aaPredicted RBP19.97■□□□□ 0.79
UPF1-209ENST00000600310 LRRC31Q6UY01 552 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 CCDC105Q8IYK2 499 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 FBXL6Q8N531 539 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 ZNF557Q8N988 423 aaPredicted RBP19.97■□□□□ 0.79
UPF1-209ENST00000600310 CLDN23Q96B33 292 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 RPRD1AQ96P16 312 aaPredicted RBP19.97■□□□□ 0.79
UPF1-209ENST00000600310 PEBP4Q96S96 227 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 OR12D3Q9UGF7 316 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 PCSK1NQ9UHG2 260 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 USP18Q9UMW8 372 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 TFR2Q9UP52 801 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 MYOFQ9NZM1 2061 aa19.97■□□□□ 0.79
UPF1-209ENST00000600310 PRR33A8MZF0 331 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 E9PAM4 449 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 TRIM24O15164 1050 aa19.96■□□□□ 0.79
UPF1-209ENST00000600310 PJA2O43164 708 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms