RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 BRD8Q9H0E9 1235 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 ADAM7Q9H2U9 754 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 PCYOX1Q9UHG3 505 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 ZNF148Q9UQR1 794 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 MTCH2Q9Y6C9 303 aa15.73■□□□□ 0.11
TRIM28-209ENST00000597423 GREB1Q4ZG55 1949 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 E2F8A0AVK6 867 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 TYW5A2RUC4 315 aaKnown RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 FAM187AA6NFU0 413 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 DRGXA6NNA5 263 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 FAM72CH0Y354 149 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 I6L893 689 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 GAS8O95995 478 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 RHOQP17081 205 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 TACR2P21452 398 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 IGFBP4P22692 258 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 MCM3P25205 808 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 CHKAP35790 457 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 EIF3EP60228 445 aaKnown RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 NTHL1P78549 312 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 RBM10P98175 930 aaKnown RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 PAFAH1B3Q15102 231 aaKnown RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 PDK1Q15118 436 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 SIX1Q15475 284 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 FAM72AQ5TYM5 149 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 PIK3R6Q5UE93 754 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 TTC39BQ5VTQ0 682 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 RAP1GAP2Q684P5 730 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 FAM72DQ6L9T8 149 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 C1orf228Q6PIY5 440 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 CCDC137Q6PK04 289 aaKnown RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 HTR3DQ70Z44 454 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 GSTA5Q7RTV2 222 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 FAM72BQ86X60 149 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 ACTL9Q8TC94 416 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 NKD2Q969F2 451 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 TCEAL4Q96EI5 215 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 RIPOR3Q96MK2 946 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 RPRD1AQ96P16 312 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 SLC22A12Q96S37 553 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 MAGEB5Q9BZ81 275 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 DDX47Q9H0S4 455 aaKnown RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 KIF9Q9HAQ2 790 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 TDP1Q9NUW8 608 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 GDE1Q9NZC3 331 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 CFAP97Q9P2B7 532 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 AGO1Q9UL18 857 aaKnown RBP15.72■□□□□ 0.11
TRIM28-209ENST00000597423 VANGL2Q9ULK5 521 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 HEY1Q9Y5J3 304 aa15.72■□□□□ 0.11
TRIM28-209ENST00000597423 MTCL1Q9Y4B5 1905 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 WASH4PA8MWX3 477 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 HACD1B0YJ81 288 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 H7C0C1 242 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 LEFTY2O00292 366 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 PPP1R12AO14974 1030 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 LIASO43766 372 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 MOSPD3O75425 235 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 HOXC13P31276 330 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 STIP1P31948 543 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 MTHFRP42898 656 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 ATP5OP48047 213 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 VCPP55072 806 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 DR1Q01658 176 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 OTUD4Q01804 1114 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 ADCY2Q08462 1091 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 SNX1Q13596 522 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 SLC5A9Q2M3M2 681 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 MANEALQ5VSG8 457 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 FBXL22Q6P050 247 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 DARS2Q6PI48 645 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 EP400NLQ6ZTU2 488 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 LRRC49Q8IUZ0 686 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 LGI2Q8N0V4 545 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 NOA1Q8NC60 698 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 CCHCR1Q8TD31 782 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 PRMT1Q99873 361 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 HERPUD2Q9BSE4 406 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 TTYH1Q9H313 450 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 TBC1D14Q9P2M4 693 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 XPO7Q9UIA9 1087 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 STOML2Q9UJZ1 356 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 R3HDM2Q9Y2K5 976 aaKnown RBP15.71■□□□□ 0.11
TRIM28-209ENST00000597423 NR2E1Q9Y466 385 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 SNX10Q9Y5X0 201 aa15.71■□□□□ 0.11
TRIM28-209ENST00000597423 MYO16Q9Y6X6 1858 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 IGLV3-10A0A075B6K4 115 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 TARSL2A2RTX5 802 aaKnown RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 CFAP69A5D8W1 941 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 SLC9A3R1O14745 358 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 DCLK1O15075 740 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 ECEL1O95672 775 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 GLP2RO95838 553 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 KLKB1P03952 638 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 ITGAVP06756 1048 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 TCF3P15923 654 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 NOMO1Q15155 1222 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 PPP1R7Q15435 360 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 C5orf22Q49AR2 442 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 NCBP2-AS2Q69YL0 99 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 SYCE2Q6PIF2 218 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms