RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ZXDBP98169 803 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 AUHQ13825 339 aaKnown RBP15.13■□□□□ 0.01
VRK3-212ENST00000596814 CTC1Q2NKJ3 1217 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 NADSYN1Q6IA69 706 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 RWDD4Q6NW29 188 aaKnown RBP15.13■□□□□ 0.01
VRK3-212ENST00000596814 LRRC31Q6UY01 552 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 C14orf80Q86SX3 495 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 DDX42Q86XP3 938 aaKnown RBP eCLIP15.13■□□□□ 0.01
VRK3-212ENST00000596814 MICALL1Q8N3F8 863 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 PLD5Q8N7P1 536 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 TTC13Q8NBP0 860 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 PRMT1Q99873 361 aaKnown RBP15.13■□□□□ 0.01
VRK3-212ENST00000596814 SMG9Q9H0W8 520 aaKnown RBP15.13■□□□□ 0.01
VRK3-212ENST00000596814 CLEC1BQ9P126 229 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 STIM2Q9P246 746 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 VANGL2Q9ULK5 521 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 R3HDM2Q9Y2K5 976 aaKnown RBP15.13■□□□□ 0.01
VRK3-212ENST00000596814 SH3BP1Q9Y3L3 701 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 DOCK4Q8N1I0 1966 aa15.13■□□□□ 0.01
VRK3-212ENST00000596814 DCLK1O15075 740 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 FGF10O15520 208 aaPredicted RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 ERCC2P18074 760 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 TACR2P21452 398 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 CYP1B1Q16678 543 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 FAM133BQ5BKY9 247 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 NCBP2-AS2Q69YL0 99 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 CES5AQ6NT32 575 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 EP400NLQ6ZTU2 488 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 C12orf50Q8NA57 414 aaPredicted RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 NOA1Q8NC60 698 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 TTC16Q8NEE8 873 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 C1orf54Q8WWF1 131 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 ATG4AQ8WYN0 398 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 DDX47Q9H0S4 455 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 ADAM7Q9H2U9 754 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 CATSPERBQ9H7T0 1116 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 HOMER3Q9NSC5 361 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 CFAP97Q9P2B7 532 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 CDH22Q9UJ99 828 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 AGO1Q9UL18 857 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 F5H5T6 163 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 LEFTY2O00292 366 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 PECAM1P16284 738 aaPredicted RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 OTUD4Q01804 1114 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 DLX2Q07687 328 aaPredicted RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 FBXL22Q6P050 247 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 C1orf228Q6PIY5 440 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 TMCO3Q6UWJ1 677 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 Q6ZNB5 142 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 GET4Q7L5D6 327 aaPredicted RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 KLHL7Q8IXQ5 586 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 ZNF683Q8IZ20 524 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 ACTL9Q8TC94 416 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 SH3RF2Q8TEC5 729 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 P3H4Q92791 437 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 USP13Q92995 863 aaPredicted RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 MAGOHBQ96A72 148 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 PABPC5Q96DU9 382 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 KRT12Q99456 494 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 FAM118BQ9BPY3 351 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 DDX50Q9BQ39 737 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 FRMD8P1Q9BZ68 369 aaPredicted RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 TDP1Q9NUW8 608 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 ETNK2Q9NVF9 386 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 PPARGC1AQ9UBK2 798 aaKnown RBP15.12■□□□□ 0.01
VRK3-212ENST00000596814 CCL26Q9Y258 94 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 ZNF510Q9Y2H8 683 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 MFHAS1Q9Y4C4 1052 aa15.12■□□□□ 0.01
VRK3-212ENST00000596814 DENND4AQ7Z401 1863 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 IGLV3-10A0A075B6K4 115 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 GOLGA6L7A0A1B0GV03 622 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 EFCAB8A8MWE9 144 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 GREM1O60565 184 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 PRAMEF12O95522 483 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 SLC6A4P31645 630 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 CHRNA3P32297 505 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 CBX2Q14781 532 aaPredicted RBP15.11■□□□□ 0.01
VRK3-212ENST00000596814 COL19A1Q14993 1142 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 CCNG2Q16589 344 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 TEX35Q5T0J7 233 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 ARTNQ5T4W7 220 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 ADGRF1Q5T601 910 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 NPNTQ6UXI9 565 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 HTR3DQ70Z44 454 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 NPAS3Q8IXF0 933 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 LGI2Q8N0V4 545 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 MMGT1Q8N4V1 131 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 ZSCAN18Q8TBC5 510 aaPredicted RBP15.11■□□□□ 0.01
VRK3-212ENST00000596814 ZSWIM3Q96MP5 696 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 RPRD1AQ96P16 312 aaPredicted RBP15.11■□□□□ 0.01
VRK3-212ENST00000596814 ZYG11BQ9C0D3 744 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 S1PR5Q9H228 398 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 LRRC19Q9H756 370 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 SAE1Q9UBE0 346 aaPredicted RBP15.11■□□□□ 0.01
VRK3-212ENST00000596814 STOML2Q9UJZ1 356 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 HEY1Q9Y5J3 304 aa15.11■□□□□ 0.01
VRK3-212ENST00000596814 SCAMP3O14828 347 aaKnown RBP15.1■□□□□ 0.01
VRK3-212ENST00000596814 MCF2LO15068 1137 aa15.1■□□□□ 0.01
VRK3-212ENST00000596814 LIASO43766 372 aa15.1■□□□□ 0.01
VRK3-212ENST00000596814 MFSD11O43934 449 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms