RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 DDX42Q86XP3 938 aaKnown RBP eCLIP6.39□□□□□ -1.39
LIG3-206ENST00000586058 ZNF276Q8N554 614 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ATPAF2Q8N5M1 289 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ALLCQ8N6M5 410 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 KREMEN2Q8NCW0 462 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 CCNYQ8ND76 341 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ANKK1Q8NFD2 765 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 FAM71BQ8TC56 605 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 TFB1MQ8WVM0 346 aaKnown RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 AUTS2Q8WXX7 1259 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 CASP10Q92851 521 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 NKD2Q969F2 451 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 PSMG2Q969U7 264 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 FAF2Q96CS3 445 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 CSPG4P5Q96PW8 444 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 KCTD15Q96SI1 283 aaPredicted RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 VN1R3Q9BXE9 311 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 FOXP3Q9BZS1 431 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 SIK2Q9H0K1 926 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 LMAN2LQ9H0V9 348 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 OSBPL2Q9H1P3 480 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 PLEKHA4Q9H4M7 779 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 SLC28A3Q9HAS3 691 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 ALG13Q9NP73 1137 aaKnown RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 GDF3Q9NR23 364 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.39□□□□□ -1.39
LIG3-206ENST00000586058 ARHGEF38Q9NXL2 777 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 IL37Q9NZH6 218 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 PAK5Q9P286 719 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 SFMBT1Q9UHJ3 866 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 DMGDHQ9UI17 866 aaKnown RBP6.39□□□□□ -1.39
LIG3-206ENST00000586058 DNPEPQ9ULA0 475 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 NFU1Q9UMS0 254 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 IRAK3Q9Y616 596 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 DNAH12Q6ZR08 3092 aa6.39□□□□□ -1.39
LIG3-206ENST00000586058 MYLKQ15746 1914 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 TRAV19A0A0A6YYK7 116 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 TCRBV7S2A1N4TA0A589 114 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 ESYT3A0FGR9 886 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 KCNU1A8MYU2 1149 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 E9PAM4 449 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 TGM5O43548 720 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 MFSD11O43934 449 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 PAGE1O75459 146 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 ZMYND10O75800 440 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 IGLV3-25P01717 112 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 FYNP06241 537 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 CKMP06732 381 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 HMBSP08397 361 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 CNPP09543 421 aaKnown RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 HNRNPA1P09651 372 aaKnown RBP eCLIP6.38□□□□□ -1.39
LIG3-206ENST00000586058 DDX6P26196 483 aaKnown RBP eCLIP6.38□□□□□ -1.39
LIG3-206ENST00000586058 GABRR2P28476 465 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 HOXA9P31269 272 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 AVPR1AP37288 418 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 KCNJ1P48048 391 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 ATXN1P54253 815 aaKnown RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 DRG2P55039 364 aaKnown RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 PLTPP55058 493 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 USP46P62068 366 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 IFFO1Q0D2I5 559 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 GPS1Q13098 491 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 SIX1Q15475 284 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 TAZQ16635 292 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 SLC45A4Q5BKX6 768 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 C6orf132Q5T0Z8 1188 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 OTUD1Q5VV17 481 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 NCBP2-AS2Q69YL0 99 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 RSPO2Q6UXX9 243 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 CCNI2Q6ZMN8 369 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 CYP4V2Q6ZWL3 525 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 BHLHA9Q7RTU4 235 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 BNIPLQ7Z465 357 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 CROCCP2Q86T23 111 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 LAPTM4BQ86VI4 370 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 HOOK3Q86VS8 718 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 CCDC25Q86WR0 208 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 BBS5Q8N3I7 341 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 ARFGAP1Q8N6T3 406 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 SLC35B2Q8TB61 432 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 HDAC7Q8WUI4 952 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 UBLCP1Q8WVY7 318 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 CASKIN2Q8WXE0 1202 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 CAVIN3Q969G5 261 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 VWCEQ96DN2 955 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 MYRFLQ96LU7 910 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 RPRD1AQ96P16 312 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 KLHL5Q96PQ7 755 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 QKIQ96PU8 341 aaKnown RBP eCLIP6.38□□□□□ -1.39
LIG3-206ENST00000586058 VAT1Q99536 393 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 FAM118BQ9BPY3 351 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 TMEM121Q9BTD3 319 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 FRMD8Q9BZ67 464 aaPredicted RBP6.38□□□□□ -1.39
LIG3-206ENST00000586058 ZYG11BQ9C0D3 744 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 EPC1Q9H2F5 836 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 RETREG1Q9H6L5 497 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 PIDD1Q9HB75 910 aa6.38□□□□□ -1.39
LIG3-206ENST00000586058 NMUR1Q9HB89 426 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms