RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 IFRD2Q12894 506 aaPredicted RBP14.61□□□□□ -0.07
LIG3-205ENST00000585941 MTA1Q13330 715 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 DDR2Q16832 855 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 TCTN1Q2MV58 587 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 HP1BP3Q5SSJ5 553 aaPredicted RBP14.61□□□□□ -0.07
LIG3-205ENST00000585941 ACBD5Q5T8D3 534 aaPredicted RBP14.61□□□□□ -0.07
LIG3-205ENST00000585941 DENND5BQ6ZUT9 1274 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 CNPY4Q8N129 248 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 MAML1Q92585 1016 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 XPO6Q96QU8 1125 aaKnown RBP14.61□□□□□ -0.07
LIG3-205ENST00000585941 CATSPERBQ9H7T0 1116 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 IGSF9Q9P2J2 1179 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 TRHDEQ9UKU6 1024 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 CHMP2BQ9UQN3 213 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 TLR6Q9Y2C9 796 aa14.61□□□□□ -0.07
LIG3-205ENST00000585941 CEP350Q5VT06 3117 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 POC1B-GALNT4F8VUJ3 575 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 NDUFAB1O14561 156 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 BANF1O75531 89 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 FAM107AO95990 144 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 SSTR1P30872 391 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 HOXC13P31276 330 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 MAGEA3P43357 314 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 TMED2Q15363 201 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 TRIM60Q495X7 471 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 CAND1Q86VP6 1230 aaKnown RBP14.6□□□□□ -0.07
LIG3-205ENST00000585941 COLGALT1Q8NBJ5 622 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 FBF1Q8TES7 1133 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 CASP10Q92851 521 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 C1orf74Q96LT6 269 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 PPP1R12CQ9BZL4 782 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 CCDC134Q9H6E4 229 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 TLR8Q9NR97 1041 aaKnown RBP14.6□□□□□ -0.07
LIG3-205ENST00000585941 DONSONQ9NYP3 566 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 FNIP2Q9P278 1114 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 CTNNAL1Q9UBT7 734 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 TBX21Q9UL17 535 aa14.6□□□□□ -0.07
LIG3-205ENST00000585941 MYO18AQ92614 2054 aaKnown RBP14.6□□□□□ -0.07
LIG3-205ENST00000585941 MTMR11A4FU01 709 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 RASA4BC9J798 803 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 RASA4O43374 803 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 HAPLN1P10915 354 aaPredicted RBP14.59□□□□□ -0.07
LIG3-205ENST00000585941 BRAFP15056 766 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 GCAP28676 217 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 MNX1P50219 401 aaPredicted RBP14.59□□□□□ -0.07
LIG3-205ENST00000585941 SLC18A1P54219 525 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 WASHC5Q12768 1159 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 USP41Q3LFD5 358 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 FAXCQ5TGI0 409 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 ADGRD1Q6QNK2 874 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 TRABD2AQ86V40 505 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 NLRP14Q86W24 1093 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 CCNJLQ8IV13 435 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 ANKLE1Q8NAG6 615 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 ATAD1Q8NBU5 361 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 TBC1D31Q96DN5 1066 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 PGLYRP2Q96PD5 576 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 WDR83Q9BRX9 315 aaKnown RBP14.59□□□□□ -0.07
LIG3-205ENST00000585941 DHRS4Q9BTZ2 278 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 NMUR1Q9HB89 426 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 PPANQ9NQ55 473 aaKnown RBP14.59□□□□□ -0.07
LIG3-205ENST00000585941 TBK1Q9UHD2 729 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 BACE2Q9Y5Z0 518 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 GREB1Q4ZG55 1949 aa14.59□□□□□ -0.07
LIG3-205ENST00000585941 TMEM120BA0PK00 339 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 ERI2A8K979 691 aaKnown RBP14.58□□□□□ -0.07
LIG3-205ENST00000585941 KCNU1A8MYU2 1149 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 PAGE1O75459 146 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 CPP00450 1065 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 AMHP03971 560 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 GARSP41250 739 aaKnown RBP14.58□□□□□ -0.07
LIG3-205ENST00000585941 MSH2P43246 934 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 RTP2Q5QGT7 225 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 MANEALQ5VSG8 457 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 ITPRIPL1Q6GPH6 555 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 CAPN12Q6ZSI9 719 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 DEFB128Q7Z7B8 93 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 LRRC49Q8IUZ0 686 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 SRRM1Q8IYB3 904 aaKnown RBP14.58□□□□□ -0.07
LIG3-205ENST00000585941 CYP4X1Q8N118 509 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 MDM1Q8TC05 714 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 FBXO32Q969P5 355 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 NAT9Q9BTE0 207 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 SSU72Q9NP77 194 aaKnown RBP14.58□□□□□ -0.07
LIG3-205ENST00000585941 NKIRAS1Q9NYS0 192 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 ZC3H7BQ9UGR2 993 aaKnown RBP14.58□□□□□ -0.07
LIG3-205ENST00000585941 SMG5Q9UPR3 1016 aaKnown RBP14.58□□□□□ -0.07
LIG3-205ENST00000585941 IKBKGQ9Y6K9 419 aa14.58□□□□□ -0.07
LIG3-205ENST00000585941 ABHD14A-ACY1A0A1B0GW23 586 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 EFEMP2O95967 443 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 KRT15P19012 456 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 KPNA1P52294 538 aaPredicted RBP14.58□□□□□ -0.08
LIG3-205ENST00000585941 ARPP19P56211 112 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 MGAT5BQ3V5L5 792 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 SLC8B1Q6J4K2 584 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 RWDD4Q6NW29 188 aaKnown RBP14.58□□□□□ -0.08
LIG3-205ENST00000585941 LRRC8BQ6P9F7 803 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 CYS1Q717R9 158 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 PID1Q7Z2X4 250 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 SPATS2Q86XZ4 545 aaKnown RBP14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms