RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HNRNPDQ14103 355 aaKnown RBP21.26■□□□□ 0.99
SHMT1-209ENST00000582653 CACUL1Q86Y37 369 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 ZNF366Q8N895 744 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 OR2T3Q8NH03 318 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 STK32AQ8WU08 396 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 SCNM1Q9BWG6 230 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 ZDHHC5Q9C0B5 715 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 CLSTN2Q9H4D0 955 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 STIM2Q9P246 746 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 APEX2Q9UBZ4 518 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 TJP2Q9UDY2 1190 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 GGA2Q9UJY4 613 aa21.26■□□□□ 0.99
SHMT1-209ENST00000582653 AJAP1Q9UKB5 411 aaPredicted RBP21.26■□□□□ 0.99
SHMT1-209ENST00000582653 ADAMTS9Q9P2N4 1935 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 PCDH15Q96QU1 1955 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 PCNX2A6NKB5 2137 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 A0A1B0GTW7 788 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 ATP5BP06576 529 aaKnown RBP21.25■□□□□ 0.99
SHMT1-209ENST00000582653 SPINK2P20155 84 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 CD70P32970 193 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 MAP1BP46821 2468 aaKnown RBP21.25■□□□□ 0.99
SHMT1-209ENST00000582653 PTPRNQ16849 979 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 TPD52L1Q16890 204 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-209ENST00000582653 EXOC3L4Q17RC7 722 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 DCAF12L1Q5VU92 463 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 TMEM110Q86TL2 294 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 TAC4Q86UU9 113 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 AHI1Q8N157 1196 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 WDTC1Q8N5D0 677 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 ZNF557Q8N988 423 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-209ENST00000582653 OR2I1PQ8NGU4 316 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 PRICKLE1Q96MT3 831 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-209ENST00000582653 SERPINB11Q96P15 392 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 TLR6Q9Y2C9 796 aa21.25■□□□□ 0.99
SHMT1-209ENST00000582653 MEI4A8MW99 385 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 C1QTNF9BB2RNN3 333 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 CAPN9O14815 690 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 SART1O43290 800 aaKnown RBP21.24■□□□□ 0.99
SHMT1-209ENST00000582653 DLDP09622 509 aaKnown RBP21.24■□□□□ 0.99
SHMT1-209ENST00000582653 C1QTNF9P0C862 333 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 PABPC1P11940 636 aaKnown RBP21.24■□□□□ 0.99
SHMT1-209ENST00000582653 SIM1P81133 766 aaPredicted RBP21.24■□□□□ 0.99
SHMT1-209ENST00000582653 TAF5Q15542 800 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 DPCR1Q3MIW9 517 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 FNDC3BQ53EP0 1204 aaKnown RBP21.24■□□□□ 0.99
SHMT1-209ENST00000582653 HSP90AA4PQ58FG1 418 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 MBLAC2Q68D91 279 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 UNQ6494/PRO21346Q6UXR6 183 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 SLC39A13Q96H72 371 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 DDX50Q9BQ39 737 aaKnown RBP21.24■□□□□ 0.99
SHMT1-209ENST00000582653 ADAM33Q9BZ11 813 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 NUCKS1Q9H1E3 243 aaKnown RBP21.24■□□□□ 0.99
SHMT1-209ENST00000582653 PCED1AQ9H1Q7 454 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 SIX2Q9NPC8 291 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 SUN2Q9UH99 717 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 XPO7Q9UIA9 1087 aaKnown RBP21.24■□□□□ 0.99
SHMT1-209ENST00000582653 ASPMQ8IZT6 3477 aa21.24■□□□□ 0.99
SHMT1-209ENST00000582653 SPAARA0A1B0GVQ0 90 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 MOCS2O96007 188 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-209ENST00000582653 RDXP35241 583 aaKnown RBP21.23■□□□□ 0.99
SHMT1-209ENST00000582653 RPS24P62847 133 aaKnown RBP21.23■□□□□ 0.99
SHMT1-209ENST00000582653 PITX1P78337 314 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-209ENST00000582653 PDCLQ13371 301 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 MEA1Q16626 185 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 BEND5Q7L4P6 421 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 PASD1Q8IV76 773 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 CFAP52Q8N1V2 620 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 KDF1Q8NAX2 398 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-209ENST00000582653 FIBINQ8TAL6 211 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 SHC3Q92529 594 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 FAM81BQ96LP2 452 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 TMEM121BQ9BXQ6 578 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-209ENST00000582653 FBRSQ9HAH7 460 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 DNAJC12Q9UKB3 198 aa21.23■□□□□ 0.99
SHMT1-209ENST00000582653 GTPBP10A4D1E9 387 aaKnown RBP21.22■□□□□ 0.99
SHMT1-209ENST00000582653 H0Y626 953 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 BCAT2O15382 392 aaPredicted RBP21.22■□□□□ 0.99
SHMT1-209ENST00000582653 TRIM16O95361 564 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 PNMA6AP0CW24 399 aaPredicted RBP21.22■□□□□ 0.99
SHMT1-209ENST00000582653 POLR2EP19388 210 aaKnown RBP21.22■□□□□ 0.99
SHMT1-209ENST00000582653 YWHAZP63104 245 aaKnown RBP21.22■□□□□ 0.99
SHMT1-209ENST00000582653 FAM193AP78312 1265 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 ZBTB16Q05516 673 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 GRIK2Q13002 908 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 NNTQ13423 1086 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 ZC3H12AQ5D1E8 599 aaKnown RBP21.22■□□□□ 0.99
SHMT1-209ENST00000582653 MFN1Q8IWA4 741 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 C1orf216Q8TAB5 229 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 LMLNQ96KR4 655 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 MIR1-1HGQ9H1L0 117 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 LHX5Q9H2C1 402 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 THAP9Q9H5L6 903 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 POPDC2Q9HBU9 364 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 PRSS16Q9NQE7 514 aa21.22■□□□□ 0.99
SHMT1-209ENST00000582653 CKAP5Q14008 2032 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 SH3BP5O60239 455 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 TRUB2O95900 331 aaKnown RBP21.21■□□□□ 0.99
SHMT1-209ENST00000582653 MAN2A1Q16706 1144 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 MS4A13Q5J8X5 152 aa21.21■□□□□ 0.99
SHMT1-209ENST00000582653 FAM124AQ86V42 546 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms