RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 WDR27A2RRH5 827 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 STK10O94804 968 aaKnown RBP20.87■□□□□ 0.93
CLN3-230ENST00000568076 SNRPAP09012 282 aaKnown RBP20.87■□□□□ 0.93
CLN3-230ENST00000568076 HNRNPH1P31943 449 aaKnown RBP20.87■□□□□ 0.93
CLN3-230ENST00000568076 TPI1P60174 286 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 CRADDP78560 199 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 ITGA7Q13683 1181 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 BMPR2Q13873 1038 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 CDHR3Q6ZTQ4 885 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 ZNF598Q86UK7 904 aaKnown RBP20.87■□□□□ 0.93
CLN3-230ENST00000568076 METTL23Q86XA0 190 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 RSPH1Q8WYR4 309 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 PTPRN2Q92932 1015 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 PGBD4Q96DM1 585 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 VPS11Q9H270 941 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 ALG13Q9NP73 1137 aaKnown RBP20.87■□□□□ 0.93
CLN3-230ENST00000568076 RNF186Q9NXI6 227 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 MOCS1Q9NZB8 636 aa20.87■□□□□ 0.93
CLN3-230ENST00000568076 TDRD15B5MCY1 1934 aaKnown RBP20.87■□□□□ 0.93
CLN3-230ENST00000568076 HMX2A2RU54 273 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 KCNK1O00180 336 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 YY1P25490 414 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 HCAR3P49019 387 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 CXCR3P49682 368 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 SARNPP82979 210 aaKnown RBP20.86■□□□□ 0.93
CLN3-230ENST00000568076 BNIP1Q12981 228 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 PARP6Q2NL67 630 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 FAM26DQ5JW98 314 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 BSPRYQ5W0U4 402 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 STEAP4Q687X5 459 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 TAC4Q86UU9 113 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 UNC5BQ8IZJ1 945 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 ARNTL2Q8WYA1 636 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 IRGQQ8WZA9 623 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 STAMBPL1Q96FJ0 436 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 FAM111AQ96PZ2 611 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 RRN3Q9NYV6 651 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 HGSO14964 777 aaPredicted RBP20.86■□□□□ 0.93
CLN3-230ENST00000568076 RFPL1O75677 317 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 KRT37O76014 449 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 NCALDP61601 193 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 GBP7Q8N8V2 638 aaPredicted RBP20.86■□□□□ 0.93
CLN3-230ENST00000568076 GORASP1Q9BQQ3 440 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 TKTL2Q9H0I9 626 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 WDCPQ9H6R7 721 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 DMAP1Q9NPF5 467 aaPredicted RBP20.86■□□□□ 0.93
CLN3-230ENST00000568076 IGSF9Q9P2J2 1179 aa20.86■□□□□ 0.93
CLN3-230ENST00000568076 THSD7BQ9C0I4 1608 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 MYO18AQ92614 2054 aaKnown RBP20.85■□□□□ 0.93
CLN3-230ENST00000568076 B4GALT3O60512 393 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 F9P00740 461 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 PTPN3P26045 913 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 ARL13BQ3SXY8 428 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 OVOS1Q6IE37 1185 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 SCAMP5Q8TAC9 235 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 C10orf82Q8WW14 230 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 DSEQ9UL01 958 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 NOD1Q9Y239 953 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 SDR42E2A6NKP2 422 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 ALDH1A2O94788 518 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 MGAT1P26572 445 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 SESN2P58004 480 aaPredicted RBP20.85■□□□□ 0.93
CLN3-230ENST00000568076 OLIG2Q13516 323 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 CYS1Q717R9 158 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 PID1Q7Z2X4 250 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 PCSK9Q8NBP7 692 aaKnown RBP20.85■□□□□ 0.93
CLN3-230ENST00000568076 SUSD3Q96L08 255 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 SRPK1Q96SB4 655 aaKnown RBP20.85■□□□□ 0.93
CLN3-230ENST00000568076 MANSC1Q9H8J5 431 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 ECT2Q9H8V3 914 aa20.85■□□□□ 0.93
CLN3-230ENST00000568076 CCNFP41002 786 aa20.84■□□□□ 0.93
CLN3-230ENST00000568076 PPIDQ08752 370 aaKnown RBP20.84■□□□□ 0.93
CLN3-230ENST00000568076 PAXIP1Q6ZW49 1069 aaPredicted RBP20.84■□□□□ 0.93
CLN3-230ENST00000568076 RTN4RL1Q86UN2 441 aaPredicted RBP20.84■□□□□ 0.93
CLN3-230ENST00000568076 CHSY1Q86X52 802 aa20.84■□□□□ 0.93
CLN3-230ENST00000568076 SCML4Q8N228 414 aa20.84■□□□□ 0.93
CLN3-230ENST00000568076 DQX1Q8TE96 717 aaKnown RBP20.84■□□□□ 0.93
CLN3-230ENST00000568076 DEPDC1BQ8WUY9 529 aa20.84■□□□□ 0.93
CLN3-230ENST00000568076 UROC1Q96N76 676 aa20.84■□□□□ 0.93
CLN3-230ENST00000568076 FERMT1Q9BQL6 677 aa20.84■□□□□ 0.93
CLN3-230ENST00000568076 OR12D3Q9UGF7 316 aa20.84■□□□□ 0.93
CLN3-230ENST00000568076 RAD54BQ9Y620 910 aa20.84■□□□□ 0.93
CLN3-230ENST00000568076 CASP8AP2Q9UKL3 1982 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 COPEO14579 308 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 LRIG2O94898 1065 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 CCDC15Q0P6D6 951 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 IFRD2Q12894 506 aaPredicted RBP20.83■□□□□ 0.93
CLN3-230ENST00000568076 CASC4Q6P4E1 433 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 PDZD4Q76G19 769 aaPredicted RBP20.83■□□□□ 0.93
CLN3-230ENST00000568076 TTC17Q96AE7 1141 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 KLC4Q9NSK0 619 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 SLC17A6Q9P2U8 582 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 CHKBQ9Y259 395 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 USH1CQ9Y6N9 552 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 NLRC5Q86WI3 1866 aa20.83■□□□□ 0.93
CLN3-230ENST00000568076 INPPL1O15357 1258 aa20.83■□□□□ 0.92
CLN3-230ENST00000568076 NIPAL4Q0D2K0 466 aa20.83■□□□□ 0.92
CLN3-230ENST00000568076 PLEKHG4Q58EX7 1191 aa20.83■□□□□ 0.92
CLN3-230ENST00000568076 LGSNQ5TDP6 509 aa20.83■□□□□ 0.92
CLN3-230ENST00000568076 MROH9Q5TGP6 573 aa20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms