RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PTGIRP43119 386 aa31.56■■■□□ 2.64
CTCF-203ENST00000566078 HARS2P49590 506 aaKnown RBP31.56■■■□□ 2.64
CTCF-203ENST00000566078 MLLT6P55198 1093 aaPredicted RBP31.56■■■□□ 2.64
CTCF-203ENST00000566078 MTA1Q13330 715 aa31.56■■■□□ 2.64
CTCF-203ENST00000566078 KCNC3Q14003 757 aa31.56■■■□□ 2.64
CTCF-203ENST00000566078 KCTD19Q17RG1 926 aaPredicted RBP31.56■■■□□ 2.64
CTCF-203ENST00000566078 C14orf80Q86SX3 495 aa31.56■■■□□ 2.64
CTCF-203ENST00000566078 SLC35B2Q8TB61 432 aa31.56■■■□□ 2.64
CTCF-203ENST00000566078 ZFRQ96KR1 1074 aaKnown RBP31.56■■■□□ 2.64
CTCF-203ENST00000566078 NSUN3Q9H649 340 aaKnown RBP31.56■■■□□ 2.64
CTCF-203ENST00000566078 CLUHO75153 1309 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 TRAV19A0A0A6YYK7 116 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 EIF3EP60228 445 aaKnown RBP31.55■■■□□ 2.64
CTCF-203ENST00000566078 NTHL1P78549 312 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 GBE1Q04446 702 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 RAP1GAP2Q684P5 730 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 GRASPQ7Z6J2 395 aaPredicted RBP31.55■■■□□ 2.64
CTCF-203ENST00000566078 JAMLQ86YT9 394 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 C12orf76Q8N812 135 aaPredicted RBP31.55■■■□□ 2.64
CTCF-203ENST00000566078 GRK7Q8WTQ7 553 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 NKD2Q969F2 451 aaPredicted RBP31.55■■■□□ 2.64
CTCF-203ENST00000566078 PNKPQ96T60 521 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 SFXN1Q9H9B4 322 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 CPQQ9Y646 472 aa31.55■■■□□ 2.64
CTCF-203ENST00000566078 MFSD11O43934 449 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 MAP3K6O95382 1288 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 ECEL1O95672 775 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 CORO1AP31146 461 aaKnown RBP31.54■■■□□ 2.64
CTCF-203ENST00000566078 HOXC13P31276 330 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 OASLQ15646 514 aaKnown RBP31.54■■■□□ 2.64
CTCF-203ENST00000566078 SLC5A9Q2M3M2 681 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 TMCO3Q6UWJ1 677 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 ATL2Q8NHH9 583 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 TRIM51Q9BSJ1 452 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 PIDD1Q9HB75 910 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 DZANK1Q9NVP4 752 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 VANGL2Q9ULK5 521 aa31.54■■■□□ 2.64
CTCF-203ENST00000566078 MOSPD3O75425 235 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 AUHQ13825 339 aaKnown RBP31.53■■■□□ 2.64
CTCF-203ENST00000566078 TEAD2Q15562 447 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 ARHGAP15Q53QZ3 475 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 GPR158Q5T848 1215 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 NADSYN1Q6IA69 706 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 CHSY1Q86X52 802 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 SMG7Q92540 1137 aaKnown RBP31.53■■■□□ 2.64
CTCF-203ENST00000566078 SLCO2A1Q92959 643 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 HINFPQ9BQA5 517 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 ZNF148Q9UQR1 794 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 FAM187AA6NFU0 413 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 ACSL4O60488 711 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 PFKLP17858 780 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 DDX6P26196 483 aaKnown RBP eCLIP31.53■■■□□ 2.64
CTCF-203ENST00000566078 SLC11A2P49281 568 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 PAFAH1B3Q15102 231 aaKnown RBP31.53■■■□□ 2.64
CTCF-203ENST00000566078 PRSS36Q5K4E3 855 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 ARTNQ5T4W7 220 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 ACBD5Q5T8D3 534 aaPredicted RBP31.53■■■□□ 2.64
CTCF-203ENST00000566078 DENND1CQ8IV53 801 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 WBP2Q969T9 261 aa31.53■■■□□ 2.64
CTCF-203ENST00000566078 PRMT1Q99873 361 aaKnown RBP31.53■■■□□ 2.64
CTCF-203ENST00000566078 NYNRINQ9P2P1 1898 aaKnown RBP31.52■■■□□ 2.64
CTCF-203ENST00000566078 ZSCAN5CA6NGD5 496 aaPredicted RBP31.52■■■□□ 2.64
CTCF-203ENST00000566078 FGF10O15520 208 aaPredicted RBP31.52■■■□□ 2.64
CTCF-203ENST00000566078 NR2C2P49116 596 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 SLC7A9P82251 487 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 GUCY2DQ02846 1103 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 SLC10A2Q12908 348 aaPredicted RBP31.52■■■□□ 2.64
CTCF-203ENST00000566078 TCEAL5Q5H9L2 206 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 TMC5Q6UXY8 1006 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 LRRC31Q6UY01 552 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 ZC3H18Q86VM9 953 aaKnown RBP31.52■■■□□ 2.64
CTCF-203ENST00000566078 ZNF683Q8IZ20 524 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 SLC46A2Q9BY10 475 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 PARD6BQ9BYG5 372 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 CATSPERBQ9H7T0 1116 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 DTLQ9NZJ0 730 aa31.52■■■□□ 2.64
CTCF-203ENST00000566078 FEZ2Q9UHY8 353 aaPredicted RBP31.52■■■□□ 2.64
CTCF-203ENST00000566078 DRG1Q9Y295 367 aaKnown RBP31.52■■■□□ 2.64
CTCF-203ENST00000566078 REV3LO60673 3130 aa31.51■■■□□ 2.64
CTCF-203ENST00000566078 GOLGA6L7A0A1B0GV03 622 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 KLKB1P03952 638 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 ITGAVP06756 1048 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 RBP3P10745 1247 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 TACR2P21452 398 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 LMNB2Q03252 620 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 HYAL1Q12794 435 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 PPP1R7Q15435 360 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 LRIT3Q3SXY7 679 aa31.51■■■□□ 2.63
CTCF-203ENST00000566078 H7C0C1 242 aa31.5■■■□□ 2.63
CTCF-203ENST00000566078 GAS8O95995 478 aa31.5■■■□□ 2.63
CTCF-203ENST00000566078 ATP5OP48047 213 aa31.5■■■□□ 2.63
CTCF-203ENST00000566078 FBXL22Q6P050 247 aa31.5■■■□□ 2.63
CTCF-203ENST00000566078 GSTA5Q7RTV2 222 aa31.5■■■□□ 2.63
CTCF-203ENST00000566078 AZIN2Q96A70 460 aa31.5■■■□□ 2.63
CTCF-203ENST00000566078 TMEM121Q9BTD3 319 aa31.5■■■□□ 2.63
CTCF-203ENST00000566078 C10orf88Q9H8K7 445 aa31.5■■■□□ 2.63
CTCF-203ENST00000566078 PAPLNO95428 1278 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 ZXDBP98169 803 aa31.49■■■□□ 2.63
CTCF-203ENST00000566078 FAM133BQ5BKY9 247 aaKnown RBP31.49■■■□□ 2.63
CTCF-203ENST00000566078 CCDC33Q8N5R6 958 aa31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms