RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 DNPEPQ9ULA0 475 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 FZD10Q9ULW2 581 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 AP4E1Q9UPM8 1137 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 CDY1Q9Y6F8 540 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 SYNJ2BP-COX16A0A087WUM0 186 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 CFAP69A5D8W1 941 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 H7C0C1 242 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 SMAPO00193 183 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 PRRG1O14668 218 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 RTN3O95197 1032 aaPredicted RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 OR4Q2P0C623 313 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 RBP3P10745 1247 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 CPB1P15086 417 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 FSHRP23945 695 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 IL4RP24394 825 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 ECHS1P30084 290 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 ADRA1BP35368 520 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 ATP5OP48047 213 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 TUFMP49411 452 aaKnown RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 SLC5A3P53794 718 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 CACNA2D1P54289 1103 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 ARPP19P56211 112 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 ROR1Q01973 937 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 DHX9Q08211 1270 aaKnown RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 XRCC4Q13426 336 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 TDGQ13569 410 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 OASLQ15646 514 aaKnown RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 ZC3H12AQ5D1E8 599 aaKnown RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 SYPL2Q5VXT5 272 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 SLC9A4Q6AI14 798 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 LRIG3Q6UXM1 1119 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 C4orf22Q6V702 233 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 CYP4V2Q6ZWL3 525 aaPredicted RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 GPRIN1Q7Z2K8 1008 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 BNIPLQ7Z465 357 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 MON1AQ86VX9 555 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 FAM131BQ86XD5 332 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 PLD5Q8N7P1 536 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 NXPE3Q969Y0 559 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 NTAN1Q96AB6 310 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 ZNF707Q96C28 371 aaPredicted RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 FAF2Q96CS3 445 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 KCNK12Q9HB15 430 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 ZDHHC18Q9NUE0 388 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 DDIT4Q9NX09 232 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 GRHL1Q9NZI5 618 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 COX16Q9P0S2 106 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 EPS15L1Q9UBC2 864 aa9.24□□□□□ -0.93
VPS39-207ENST00000563692 TPX2Q9ULW0 747 aaKnown RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 ZFP37Q9Y6Q3 630 aaPredicted RBP9.24□□□□□ -0.93
VPS39-207ENST00000563692 TECTAO75443 2155 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 C5orf42Q9H799 3197 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 GOLGA6L10A6NI86 522 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 TNFRSF10BO14763 440 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 CCL16O15467 120 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 ADAM12O43184 909 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 TBC1D4O60343 1298 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 PPFIA2O75334 1257 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 IFNB1P01574 187 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 LRG1P02750 347 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 FYNP06241 537 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 POU2F2P09086 479 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 RARGP13631 454 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 TFE3P19532 575 aaPredicted RBP9.23□□□□□ -0.93
VPS39-207ENST00000563692 YWHAQP27348 245 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 HCAR3P49019 387 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 PSEN1P49768 467 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 CDR1P51861 262 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 PMS2P54278 862 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 EIF3BP55884 814 aaKnown RBP9.23□□□□□ -0.93
VPS39-207ENST00000563692 FAM193AP78312 1265 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 GPS1Q13098 491 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 MMRN1Q13201 1228 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 NOMO1Q15155 1222 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 TRIP13Q15645 432 aaPredicted RBP9.23□□□□□ -0.93
VPS39-207ENST00000563692 DDR2Q16832 855 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 RAB6CQ53S08 254 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 BRMS1LQ5PSV4 323 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 IZUMO3Q5VZ72 239 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 SLC8B1Q6J4K2 584 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 C1orf228Q6PIY5 440 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 GRASPQ7Z6J2 395 aaPredicted RBP9.23□□□□□ -0.93
VPS39-207ENST00000563692 CROCCP2Q86T23 111 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 IQCKQ8N0W5 287 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 ELMOD1Q8N336 334 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 CCDC185Q8N715 623 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 PCDH19Q8TAB3 1148 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 SCAMP5Q8TAC9 235 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 ZNF461Q8TAF7 563 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 FBXO25Q8TCJ0 367 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 UBLCP1Q8WVY7 318 aaPredicted RBP9.23□□□□□ -0.93
VPS39-207ENST00000563692 EDEM1Q92611 657 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 ASIC4Q96FT7 647 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 SPATA17Q96L03 361 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 KCTD15Q96SI1 283 aaPredicted RBP9.23□□□□□ -0.93
VPS39-207ENST00000563692 FAM118BQ9BPY3 351 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 TMEM121Q9BTD3 319 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 RAB6CQ9H0N0 254 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 NEUROG2Q9H2A3 272 aa9.23□□□□□ -0.93
VPS39-207ENST00000563692 PCDH9Q9HC56 1237 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms