RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GBP7Q8N8V2 638 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 ZNF557Q8N988 423 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 CCNYQ8ND76 341 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 OR10T2Q8NGX3 314 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 GSDMBQ8TAX9 411 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 BCAS4Q8TDM0 211 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 ACMSDQ8TDX5 336 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 SREK1Q8WXA9 508 aaKnown RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 RIN2Q8WYP3 895 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 FBXO32Q969P5 355 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 AZIN2Q96A70 460 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TTC17Q96AE7 1141 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 ARL8AQ96BM9 186 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 ARMC5Q96C12 935 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TMEM169Q96HH4 297 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 CABS1Q96KC9 395 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 ZNF558Q96NG5 402 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 HERPUD2Q9BSE4 406 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TTLL2Q9BWV7 592 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 UBE2OQ9C0C9 1292 aaKnown RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 IL22Q9GZX6 179 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TKTL2Q9H0I9 626 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 MTIF3Q9H2K0 278 aaKnown RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 EPB41L4BQ9H329 900 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 PLEKHA4Q9H4M7 779 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 VPS45Q9NRW7 570 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 PIGVQ9NUD9 493 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 MTMR10Q9NXD2 777 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 BFARQ9NZS9 450 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 KLHL8Q9P2G9 620 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 TXNDC16Q9P2K2 825 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 AFF4Q9UHB7 1163 aaKnown RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 DPP7Q9UHL4 492 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 ASB3Q9Y575 518 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 GOLGA6L7A0A1B0GV03 622 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 TLDC2A0PJX2 215 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 TYW5A2RUC4 315 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 FAM47DPA6NHR8 397 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ARHGAP42A6NI28 874 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 SDR42E2A6NKP2 422 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 TBKBP1A7MCY6 615 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 SOBPA7XYQ1 873 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 RASA4BC9J798 803 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 RNF103O00237 685 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 PIK3R2O00459 728 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 RASA4O43374 803 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 CREB3O43889 395 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 BEST1O76090 585 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 DDHD2O94830 711 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 SUN1O94901 812 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 SOD2P04179 222 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 URODP06132 367 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 POLBP06746 335 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 GALTP07902 379 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 HAPLN1P10915 354 aaPredicted RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 RHOQP17081 205 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ERCC2P18074 760 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 PGAM1P18669 254 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 CES1P23141 567 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 PRKCHP24723 683 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 DNAJB1P25685 340 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 MAGEA3P43357 314 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 GJA8P48165 433 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 POLD2P49005 469 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 NPY2RP49146 381 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 SLC11A2P49281 568 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 RENBPP51606 427 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 GEMP55040 296 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 IFI35P80217 286 aaPredicted RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 AP1B1Q10567 949 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 MMRN1Q13201 1228 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 AUHQ13825 339 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 SPARCL1Q14515 664 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 KYNUQ16719 465 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 UGP2Q16851 508 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 RABGAP1LQ5R372 815 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ANKRD20A2Q5SQ80 823 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ANKRD20A1Q5TYW2 823 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ANKRD20A3Q5VUR7 823 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 KIAA0319Q5VV43 1072 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 KCTD16Q68DU8 428 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 CD300LGQ6UXG3 332 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 C3orf62Q6ZUJ4 267 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 METTL3Q86U44 580 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 RTN4RL1Q86UN2 441 aaPredicted RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 TAC4Q86UU9 113 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 SLC26A11Q86WA9 606 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 SCN4BQ8IWT1 228 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 LMNTD2Q8IXW0 634 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 CCDC185Q8N715 623 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 RTL3Q8N8U3 475 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 RAB3IL1Q8TBN0 382 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 CLEC4CQ8WTT0 213 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ATXN2LQ8WWM7 1075 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 SCG3Q8WXD2 468 aaKnown RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 LINC01599Q8WXQ3 324 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 PEX13Q92968 403 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 PLD4Q96BZ4 506 aa7.73□□□□□ -1.17
VPS39-204ENST00000561818 ACSF2Q96CM8 615 aaPredicted RBP7.73□□□□□ -1.17
VPS39-204ENST00000561818 CHMP6Q96FZ7 201 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms