RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MON1BQ7L1V2 547 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 UNC45BQ8IWX7 931 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CMTM8Q8IZV2 173 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 ANKLE1Q8NAG6 615 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CSGALNACT1Q8TDX6 532 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 WHAMMQ8TF30 809 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 ARMC5Q96C12 935 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 GPR63Q9BZJ6 419 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CARD9Q9H257 536 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 TNKS2Q9H2K2 1166 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 EBF3Q9H4W6 596 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 IPO11Q9UI26 975 aaKnown RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 NR2E1Q9Y466 385 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 A0A0C4DFX4 3053 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 DGKIO75912 1065 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 LRIG2O94898 1065 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PCDH8O95206 1070 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PTPN2P17706 415 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 LRPAP1P30533 357 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CHRNA3P32297 505 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ADRA1BP35368 520 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 COILP38432 576 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CLCN6P51797 869 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 NSUN2Q08J23 767 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 GPR17Q13304 367 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 TUBB2AQ13885 445 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 TRADDQ15628 312 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 MARC1Q5VT66 337 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 NYAP1Q6ZVC0 841 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CENPUQ71F23 418 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 Q7L0L9 218 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PHF13Q86YI8 300 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ARID3BQ8IVW6 561 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 GPATCH11Q8N954 259 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 GSTCDQ8NEC7 633 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 LPCAT1Q8NF37 534 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CFAP61Q8NHU2 1237 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ZNF669Q96BR6 464 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 RBM15Q96T37 977 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 KXD1Q9BQD3 176 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 TUBB2BQ9BVA1 445 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PBX4Q9BYU1 374 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 SLC13A1Q9BZW2 595 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ISCUQ9H1K1 167 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 VPS11Q9H270 941 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ZDHHC6Q9H6R6 413 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 DONSONQ9NYP3 566 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 HCFC2Q9Y5Z7 792 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 TET1Q8NFU7 2136 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ABLIM1O14639 778 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PHF2O75151 1096 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 IL1BP01584 269 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ZFXP17010 805 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ITGB6P18564 788 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 TYMPP19971 482 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 IL1R2P27930 398 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 AKT1P31749 480 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ARL4CP56559 192 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 NR1H3Q13133 447 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 NUGGCQ68CJ6 796 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CCSAPQ6IQ19 270 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 KIAA1324Q6UXG2 1013 aaKnown RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 FBXO25Q8TCJ0 367 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 AGR3Q8TD06 166 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 UBE2Q2Q8WVN8 375 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 TCEAL4Q96EI5 215 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 NDFIP2Q9NV92 336 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 NKIRAS1Q9NYS0 192 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 INTUQ9ULD6 942 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 G3BP2Q9UN86 482 aaKnown RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 MFHAS1Q9Y4C4 1052 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ATG2BQ96BY7 2078 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CACNA1GO43497 2377 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 LINC01553A4QN01 128 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 RNF103O00237 685 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CCL22O00626 93 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 AXIN1O15169 862 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 SYNCRIPO60506 623 aaKnown RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PRKCGP05129 697 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 RHOP08100 348 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PFKMP08237 780 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 UNGP13051 313 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 FOSL2P15408 326 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CTPS1P17812 591 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 GDI1P31150 447 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 MSH2P43246 934 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 RGS19P49795 217 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CDK7P50613 346 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 MGAT3Q09327 533 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 RAB30Q15771 203 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PPP2R5EQ16537 467 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 HIF1AQ16665 826 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 SLC25A52Q3SY17 297 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 SDE2Q6IQ49 451 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 NUDT18Q6ZVK8 323 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 ANKRD33Q7Z3H0 272 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 SRRM1Q8IYB3 904 aaKnown RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 CRYBG2Q8N1P7 616 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms