RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CYP2C8P10632 490 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 THRAP10827 490 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 CPA3P15088 417 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 CYP3A5P20815 502 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 PEX2P28328 305 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 HDAC4P56524 1084 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 CA9Q16790 459 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 GOLGA7BQ2TAP0 167 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 SPANXN3Q5MJ09 141 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 MAP1SQ66K74 1059 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 C16orf46Q6P387 395 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 EPGNQ6UW88 154 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 UGT2A3Q6UWM9 527 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 C16orf89Q6UX73 402 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 PSTKQ8IV42 348 aaKnown RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 POU5F2Q8N7G0 328 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 DGCR14Q96DF8 476 aaKnown RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 CDH19Q9H159 772 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 STK39Q9UEW8 545 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 RAB26Q9ULW5 256 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 DTNAQ9Y4J8 743 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 AFG3L2Q9Y4W6 797 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 CREB3O43889 395 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 TYK2P29597 1187 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 PHKA2P46019 1235 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 HSPA13P48723 471 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 PRKAA2P54646 552 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 GBE1Q04446 702 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 TMEM132DQ14C87 1099 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 RAB6CQ53S08 254 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 PPP6R3Q5H9R7 873 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-231ENST00000557433 LPCAT4Q643R3 524 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 CASC4Q6P4E1 433 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 LRRC71Q8N4P6 559 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 CNDP1Q96KN2 507 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 ZFRQ96KR1 1074 aaKnown RBP16.71■□□□□ 0.27
SHMT2-231ENST00000557433 C11orf84Q9BUA3 381 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-231ENST00000557433 RAB6CQ9H0N0 254 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 PNPOQ9NVS9 261 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 PTTG2Q9NZH5 202 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 ATXN10Q9UBB4 475 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 HESX1Q9UBX0 185 aa16.71■□□□□ 0.27
SHMT2-231ENST00000557433 BTBD19C9JJ37 291 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 H3BNX3 289 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 GPR25O00155 361 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 B4GALT5O43286 388 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 GRAP2O75791 330 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 MPOP05164 745 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 POLBP06746 335 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 NCF2P19878 526 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 RPL5P46777 297 aaKnown RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 SERPINB8P50452 374 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 KLF10Q13118 480 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 PRKG1Q13976 671 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 R3HDM1Q15032 1099 aaKnown RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 LRRC23Q53EV4 343 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 HSP90AA5PQ58FG0 334 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 SH2D4BQ5SQS7 431 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 RARS2Q5T160 578 aaKnown RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 IFNLR1Q8IU57 520 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 PQLC1Q8N2U9 271 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 KHSRPQ92945 711 aaKnown RBP eCLIP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 PIWIL1Q96J94 861 aaKnown RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 WRNIP1Q96S55 665 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 EPAS1Q99814 870 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 PDZD7Q9H5P4 517 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 HBP1O60381 514 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 PDE5AO76074 875 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 PRKCGP05129 697 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 APOA4P06727 396 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 VAV1P15498 845 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 SPRP35270 261 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 ALDH1A3P47895 512 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 FOLH1Q04609 750 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 SLC10A2Q12908 348 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 DLG1Q12959 904 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 NBPF12Q5TAG4 269 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 SLC26A9Q7LBE3 791 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 SLC35F5Q8WV83 523 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 DLG3Q92796 817 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 EZH1Q92800 747 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 CLMNQ96JQ2 1002 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 CSPG4P5Q96PW8 444 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 GPR20Q99678 358 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 DHX35Q9H5Z1 703 aaKnown RBP16.7■□□□□ 0.26
SHMT2-231ENST00000557433 AP4E1Q9UPM8 1137 aa16.7■□□□□ 0.26
SHMT2-231ENST00000557433 C15orf38-AP3S2A0A0A6YYH1 394 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 STRNO43815 780 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 TOP3BO95985 862 aaKnown RBP16.69■□□□□ 0.26
SHMT2-231ENST00000557433 FSTL1Q12841 308 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 SNAPC2Q13487 334 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 PMF1Q6P1K2 205 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 FRMD7Q6ZUT3 714 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 DPH6Q7L8W6 267 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 ARPINQ7Z6K5 226 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 SPATA24Q86W54 205 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 HPS6Q86YV9 775 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 RIOX2Q8IUF8 465 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 TMEM192Q8IY95 271 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 ARNTL2Q8WYA1 636 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms