RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TMEM63CQ9P1W3 806 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 USP36Q9P275 1121 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 SLC12A6Q9UHW9 1150 aa16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 EVLQ9UI08 416 aaPredicted RBP16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 NOCTQ9UK39 431 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-209ENST00000554872 GOLGA6L7A0A1B0GV03 622 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 WASH3PC4AMC7 463 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 AP5Z1O43299 807 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 CAVIN2O95810 425 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 ATP5BP06576 529 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 DLDP09622 509 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 MATKP42679 507 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 NOMO3P69849 1222 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 PITX1P78337 314 aaPredicted RBP16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 TYRO3Q06418 890 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 PTPRNQ16849 979 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 ZC3H12AQ5D1E8 599 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 ACBD5Q5T8D3 534 aaPredicted RBP16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 CHST9Q7L1S5 443 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 DGLUCYQ7Z3D6 616 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 CYP2U1Q7Z449 544 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 MFN1Q8IWA4 741 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 ABCA7Q8IZY2 2146 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 PGBD3Q8N328 593 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 C12orf50Q8NA57 414 aaPredicted RBP16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 MSANTD4Q8NCY6 345 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 WFDC5Q8TCV5 224 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 RLN3Q8WXF3 142 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 NAT10Q9H0A0 1025 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 SYNCQ9H7C4 482 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 FAM204AQ9H8W3 233 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 DDIT4Q9NX09 232 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 INVSQ9Y283 1065 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 RAD54BQ9Y620 910 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 THADAQ6YHU6 1953 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 NUP205Q92621 2012 aa16.62■□□□□ 0.25
CCDC88C-209ENST00000554872 SDK1Q7Z5N4 2213 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 SYNCRIPO60506 623 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 LUC7L3O95232 432 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 ASLP04424 464 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 TACR2P21452 398 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 PRKCHP24723 683 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 CD70P32970 193 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 SOX5P35711 763 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 COPAP53621 1224 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 ATXN1P54253 815 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 RPS24P62847 133 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 CDR2Q01850 454 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 CREB5Q02930 508 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 SLC12A1Q13621 1099 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 SF3A2Q15428 464 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 MBLAC2Q68D91 279 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 OR6B2Q6IFH4 312 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 SERPINA13PQ6UXR4 307 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 TRIM72Q6ZMU5 477 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 C18orf8Q96DM3 657 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 MYEOVQ96EZ4 313 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 NPY6RQ99463 290 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 MKRN2Q9H000 416 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 PRDM16Q9HAZ2 1276 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 FAM207AQ9NSI2 230 aaPredicted RBP16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 XPO7Q9UIA9 1087 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 STAP1Q9ULZ2 295 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 PLA2G4CQ9UP65 541 aa16.61■□□□□ 0.25
CCDC88C-209ENST00000554872 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 F5H5T6 163 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 EPHB6O15197 1021 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 MOCS2O96007 188 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 CYP1A1P04798 512 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 POLR2EP19388 210 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 ABCB4P21439 1286 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 OXCT1P55809 520 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 POLR2FP61218 127 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 ARID5AQ03989 594 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 CDH18Q13634 790 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 SYCP1Q15431 976 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 C5orf22Q49AR2 442 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 AASDHQ4L235 1098 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 BRMS1LQ5PSV4 323 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 OTUD1Q5VV17 481 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 LYSMD4Q5XG99 296 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 BNIPLQ7Z465 357 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 RABEPKQ7Z6M1 372 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 CHSY1Q86X52 802 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 ERICH1Q86X53 443 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 XYLT1Q86Y38 959 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 SYT12Q8IV01 421 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 SORCS1Q8WY21 1168 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 PDCL3Q9H2J4 239 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 ITM2CQ9NQX7 267 aa16.6■□□□□ 0.25
CCDC88C-209ENST00000554872 A0A1B0GVM2 712 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 TCAF2A6NFQ2 919 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 MAP3K13O43283 966 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 F9P00740 461 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 MMEP08473 750 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 MMP8P22894 467 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 OXTRP30559 389 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 STAT1P42224 750 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 CXCR3P49682 368 aa16.59■□□□□ 0.25
CCDC88C-209ENST00000554872 KLK7P49862 253 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms