RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 TP73O15350 636 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 RGS16O15492 202 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 AGTP01019 485 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 ZDHHC11BP0C7U3 371 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 HSPA1AP0DMV8 641 aaKnown RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 HSPA1BP0DMV9 641 aaKnown RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 ETS1P14921 441 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 TPSB2P20231 275 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 ATP5C1P36542 298 aaKnown RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 LMAN1P49257 510 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 RABGGTBP53611 331 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 GBE1Q04446 702 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 AP1B1Q10567 949 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 PRKD1Q15139 912 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 TPSAB1Q15661 275 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 PABPC1LQ4VXU2 614 aaKnown RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 C10orf120Q5SQS8 335 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 ITPRIPL1Q6GPH6 555 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 PRSS55Q6UWB4 352 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 RTL10Q7L3V2 364 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 TAOK1Q7L7X3 1001 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 CCNJLQ8IV13 435 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 PALM2Q8IXS6 379 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 CPT1BQ92523 772 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 CASP10Q92851 521 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 TRMT2BQ96GJ1 504 aaKnown RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 FCRL2Q96LA5 508 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 SPATA13Q96N96 652 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 DDX50Q9BQ39 737 aaKnown RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 CENPHQ9H3R5 247 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 ETNK2Q9NVF9 386 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 HAUS2Q9NVX0 235 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 TRPM5Q9NZQ8 1165 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 GMIPQ9P107 970 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 PPARGC1AQ9UBK2 798 aaKnown RBP13.85□□□□□ -0.19
PTCH1-215ENST00000547672 FETUBQ9UGM5 382 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 DNMT3LQ9UJW3 386 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 LTBP2Q14767 1821 aa13.85□□□□□ -0.19
PTCH1-215ENST00000547672 WDR27A2RRH5 827 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 ZBBXA8MT70 800 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 WASH4PA8MWX3 477 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 PRRG1O14668 218 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 PAGE1O75459 146 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 LRIG2O94898 1065 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 MLNP12872 115 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 CCNCP24863 283 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 HOXC13P31276 330 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 TUBP50607 506 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 GDF10P55107 478 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 PPIDQ08752 370 aaKnown RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 GALNT2Q10471 571 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 SLC10A2Q12908 348 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 PDIA2Q13087 525 aaKnown RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 PRPSAP1Q14558 356 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 KYNUQ16719 465 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 TIGD7Q6NT04 549 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 RWDD4Q6NW29 188 aaKnown RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 TCEAL8Q8IYN2 117 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 ATP11CQ8NB49 1132 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 BCL7CQ8WUZ0 217 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 AZIN2Q96A70 460 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 HDAC11Q96DB2 347 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 SLC39A13Q96H72 371 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 B3GALT6Q96L58 329 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 MYRFLQ96LU7 910 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 ZNF512Q96ME7 567 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 TSGA13Q96PP4 275 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 CLSTN3Q9BQT9 956 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 NACA2Q9H009 215 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 SIK2Q9H0K1 926 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 CNOT10Q9H9A5 744 aaKnown RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 NMUR1Q9HB89 426 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 RC3H2Q9HBD1 1191 aaKnown RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 EIF2B3Q9NR50 452 aaKnown RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 BCCIPQ9P287 314 aaKnown RBP eCLIP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 MRPL42Q9Y6G3 142 aaKnown RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 COL4A4P53420 1690 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-215ENST00000547672 VWA8A3KMH1 1905 aa13.84□□□□□ -0.19
PTCH1-215ENST00000547672 E7ESA3 106 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 LPXNO60711 386 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 C1RP00736 705 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 SRGAP2BP0DMP2 458 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 DNAJB2P25686 324 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 CHKAP35790 457 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 PBX3P40426 434 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 SLC11A2P49281 568 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 HARS2P49590 506 aaKnown RBP13.83□□□□□ -0.2
PTCH1-215ENST00000547672 NDST2P52849 883 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 DEFB103AP81534 67 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 HTRA4P83105 476 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-215ENST00000547672 EFEMP1Q12805 493 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 KCNJ11Q14654 390 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 RASA2Q15283 850 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 ANO4Q32M45 955 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 CCDC38Q502W7 563 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 ANKRD20A2Q5SQ80 823 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 HECTD3Q5T447 861 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 ANKRD20A1Q5TYW2 823 aa13.83□□□□□ -0.2
PTCH1-215ENST00000547672 ANKRD20A3Q5VUR7 823 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms