RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 DDX50Q9BQ39 737 aaKnown RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 GPR88Q9GZN0 384 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 GOLPH3Q9H4A6 298 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 MAGEE1Q9HCI5 957 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 NPHS2Q9NP85 383 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 SLCO1B3Q9NPD5 702 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 PDGFCQ9NRA1 345 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 KCTD5Q9NXV2 234 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 TMEM9Q9P0T7 183 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 COG5Q9UP83 839 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 SCN5AQ14524 2016 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 TSC2P49815 1807 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 A0A1W2PQ45 241 aaPredicted RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 A0A1W2PQY0 241 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 MYADML2A6NDP7 307 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 TRIM64A6NGJ6 449 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 SPAG6O75602 509 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 FAM58BPP0C7Q3 252 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 GAP43P17677 238 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 KLRC2P26717 231 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 MAPK1P28482 360 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 BMP8BP34820 402 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 RPA3P35244 121 aaPredicted RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 ADCYAP1R1P41586 468 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 ETV4P43268 484 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 MASP1P48740 699 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 HNRNPFP52597 415 aaKnown RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 RACK1P63244 317 aaKnown RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 TXNL4AP83876 142 aaKnown RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 SLC1A5Q15758 541 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 STXBP5Q5T5C0 1151 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 UBAP2Q5T6F2 1119 aaKnown RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 PRPF38BQ5VTL8 546 aaKnown RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 C1orf146Q5VVC0 180 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 NSMFQ6X4W1 530 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 RAPH1Q70E73 1250 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 KBTBD6Q86V97 674 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 SLC9A9Q8IVB4 645 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 FAM126BQ8IXS8 530 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 METTL25Q8N6Q8 603 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 DTX3LQ8TDB6 740 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 GDPD5Q8WTR4 605 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 STARD8Q92502 1023 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 ABTB1Q969K4 478 aaPredicted RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 ASIC4Q96FT7 647 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 ANKRD36BP1Q96IX9 119 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 C1orf74Q96LT6 269 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 OLFML3Q9NRN5 406 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 ARHGEF38Q9NXL2 777 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 GCNT4Q9P109 453 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 SEL1LQ9UBV2 794 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 ASIC3Q9UHC3 531 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 TBX21Q9UL17 535 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 PPM1HQ9ULR3 514 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 PRPF19Q9UMS4 504 aaKnown RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 DRG1Q9Y295 367 aaKnown RBP5.42□□□□□ -1.54
USP28-213ENST00000544967 SLC30A1Q9Y6M5 507 aa5.42□□□□□ -1.54
USP28-213ENST00000544967 B2RBV5 119 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DPYSL4O14531 572 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DNALI1O14645 258 aaPredicted RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 SLC22A2O15244 555 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 KDM1AO60341 852 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 CCNT1O60563 726 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 MSL3P1P0C860 447 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 PYGMP11217 842 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 PROZP22891 400 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ACLYP53396 1101 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 NCKAP1LP55160 1127 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ZBTB16Q05516 673 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 MGAT3Q09327 533 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 STX3Q13277 289 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 KLF1Q13351 362 aaPredicted RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 FSCN1Q16658 493 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 MAPK6Q16659 721 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 RARS2Q5T160 578 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 ATG16L1Q676U5 607 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ZNF354CQ86Y25 554 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ARHGEF26Q96DR7 871 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 KATNAL1Q9BW62 490 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 XPNPEP3Q9NQH7 507 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DKK3Q9UBP4 350 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 APEX2Q9UBZ4 518 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DNAJC12Q9UKB3 198 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 COQ6Q9Y2Z9 468 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DTNAQ9Y4J8 743 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 TRIP12Q14669 1992 aaPredicted RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 A0A1W2PPC1 479 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 PITPNM1O00562 1244 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 PSTPIP1O43586 416 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 IDH3BO43837 385 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 MGEA5O60502 916 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 DNAJA2O60884 412 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 CNOT3O75175 753 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 B3GALNT1O75752 331 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 CSPG5O95196 566 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 P4HBP07237 508 aaKnown RBP5.41□□□□□ -1.54
USP28-213ENST00000544967 INHBBP09529 407 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ALOX5P09917 674 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 SUPT20HL2P0C7V6 817 aa5.41□□□□□ -1.54
USP28-213ENST00000544967 ARP10275 920 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms