RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, human

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF1A-215	ENST00000543359	HJURP	Q8NCD3	748 aa	Predicted RBP	13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	CYB5D2	Q8WUJ1	264 aa		13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	MYO19	Q96H55	970 aa		13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	ZNF419	Q96HQ0	510 aa	Predicted RBP	13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	PRMT1	Q99873	361 aa	Known RBP	13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	TRIM62	Q9BVG3	475 aa		13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	ADAM33	Q9BZ11	813 aa		13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	CIPC	Q9C0C6	399 aa		13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	PRDM16	Q9HAZ2	1276 aa		13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	PLCB1	Q9NQ66	1216 aa		13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	USP36	Q9P275	1121 aa	Known RBP	13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	NUMA1	Q14980	2115 aa		13.6	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	CAPN9	O14815	690 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	KHNYN	O15037	678 aa	Known RBP	13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	AP5Z1	O43299	807 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	IGLV3-19	P01714	112 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	UCHL3	P15374	230 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	CYP11B1	P15538	503 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	LMAN2	Q12907	356 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	STARD3	Q14849	445 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	KRT31	Q15323	416 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	FSCB	Q5H9T9	825 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	EFHC1	Q5JVL4	640 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	OTUD1	Q5VV17	481 aa	Predicted RBP	13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	LYSMD4	Q5XG99	296 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	MBLAC2	Q68D91	279 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	SLC23A3	Q6PIS1	610 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	AHI1	Q8N157	1196 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	CFAP52	Q8N1V2	620 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	ZNF397	Q8NF99	534 aa	Predicted RBP	13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	TTC17	Q96AE7	1141 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	LSM14B	Q9BX40	385 aa	Known RBP	13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	STK33	Q9BYT3	514 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	GAN	Q9H2C0	597 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	TAB2	Q9NYJ8	693 aa		13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	WSB2	Q9NYS7	404 aa	Predicted RBP	13.59	□□□□□ -0.23
TNFRSF1A-215	ENST00000543359	PCDH15	Q96QU1	1955 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	C4orf47	A7E2U8	309 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	ZBTB24	O43167	697 aa	Predicted RBP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	SYNCRIP	O60506	623 aa	Known RBP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	HSF2BP	O75031	334 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	GRAP2	O75791	330 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	MOCS2	O96007	188 aa	Predicted RBP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	EPHX1	P07099	455 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	DLD	P09622	509 aa	Known RBP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	TACR2	P21452	398 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	HOXD12	P35452	270 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	KRT9	P35527	623 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	GABRB2	P47870	512 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	KLK7	P49862	253 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	TPMT	P51580	245 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	BPIFB4	P59827	614 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	SLC6A3	Q01959	620 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	ZNF33A	Q06730	810 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	E2F5	Q15329	346 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	TRIM61	Q5EBN2	209 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	PPM1J	Q5JR12	505 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	SERPINA13P	Q6UXR4	307 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	MMS22L	Q6ZRQ5	1243 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	SLC26A9	Q7LBE3	791 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	NOP9	Q86U38	636 aa	Known RBP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	MFN1	Q8IWA4	741 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	BTN2A3P	Q96KV6	586 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	MRGPRX3	Q96LB0	322 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	GBP4	Q96PP9	640 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	DDX50	Q9BQ39	737 aa	Known RBP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	EDEM2	Q9BV94	578 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	HSD3B7	Q9H2F3	369 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	FANCL	Q9NW38	375 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	STIM2	Q9P246	746 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	KMT2B	Q9UMN6	2715 aa	Predicted RBP	13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	PCNX2	A6NKB5	2137 aa		13.58	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	ADAMTS9	Q9P2N4	1935 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359		F8VZ95	297 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359		I6L893	689 aa	Predicted RBP	13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	EPHB6	O15197	1021 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	LUC7L3	O95232	432 aa	Known RBP	13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	CD6	P30203	668 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	CSK	P41240	450 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	JAM2	P57087	298 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	CDK17	Q00537	523 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	RAPGEF1	Q13905	1077 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	ARTN	Q5T4W7	220 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	RAP1GAP2	Q684P5	730 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	IL31	Q6EBC2	164 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	OR6B2	Q6IFH4	312 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	KIAA1324	Q6UXG2	1013 aa	Known RBP	13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	APTX	Q7Z2E3	356 aa	Known RBP	13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	LGI2	Q8N0V4	545 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	ZNF366	Q8N895	744 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	OR2T3	Q8NH03	318 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	NT5C3B	Q969T7	300 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	SIPA1	Q96FS4	1042 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	TOE1	Q96GM8	510 aa	Known RBP	13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	NOX5	Q96PH1	765 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	VPS16	Q9H269	839 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	CAPN10	Q9HC96	672 aa		13.57	□□□□□ -0.24
TNFRSF1A-215	ENST00000543359	PRSS16	Q9NQE7	514 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms