RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 GOLGA4Q13439 2230 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 H0Y8X5 98 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 RNF225M0QZC1 329 aaPredicted RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 TBL1XO60907 577 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 FSBPO95073 299 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 ZNF202O95125 648 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 EPB41P11171 864 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 NUMBP49757 651 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 AFF3P51826 1226 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 ARID5AQ03989 594 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 SOWAHCQ53LP3 525 aaPredicted RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 PRAMEF14Q5SWL7 426 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 PIK3R6Q5UE93 754 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 PMF1Q6P1K2 205 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 MSANTD2Q6P1R3 559 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 MMS22LQ6ZRQ5 1243 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 TMPRSS7Q7RTY8 843 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 PDZD3Q86UT5 571 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 WFIKKN2Q8TEU8 576 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 SLC35C1Q96A29 364 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 TMA16Q96EY4 203 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 FAXDC2Q96IV6 333 aa16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 IPO9Q96P70 1041 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 OLA1Q9NTK5 396 aaKnown RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 KIAA1522Q9P206 1035 aaPredicted RBP16.1■□□□□ 0.17
CLSTN3-213ENST00000541953 CBX4O00257 560 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 WNT9AO14904 365 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 CETN3O15182 167 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 FLRT2O43155 660 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 TIMM44O43615 452 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 CTSOP43234 321 aaPredicted RBP16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 CTSKP43235 329 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 CAMK2BQ13554 666 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 ACAP1Q15027 740 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 ANKRD40Q6AI12 368 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 AHI1Q8N157 1196 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 SIX6OS1Q8N1H7 587 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 TTC39CQ8N584 583 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 RNF139Q8WU17 664 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 SLC35F5Q8WV83 523 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 HNRNPLLQ8WVV9 542 aaKnown RBP16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 KCTD13Q8WZ19 329 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 CCDC47Q96A33 483 aaKnown RBP16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 MRGPRX3Q96LB0 322 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 SLC6A18Q96N87 628 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 STIM2Q9P246 746 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 PCDHGB2Q9Y5G2 931 aa16.09■□□□□ 0.17
CLSTN3-213ENST00000541953 A0A1W2PQ27 194 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 A0A1W2PQ64 194 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 SIN3BO75182 1162 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 WNT1P04628 370 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 FYNP06241 537 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 DLDP09622 509 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 VDRP11473 427 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 BRD2P25440 801 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 GRIA4P48058 902 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 RPS24P62847 133 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 CCDC157Q569K6 752 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 FSCBQ5H9T9 825 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 IL27RAQ6UWB1 636 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 BTBD1Q9H0C5 482 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 NUCKS1Q9H1E3 243 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 PCED1AQ9H1Q7 454 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 CNGB3Q9NQW8 809 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 ABCC13Q9NSE7 274 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 HESX1Q9UBX0 185 aa16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 XPO7Q9UIA9 1087 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-213ENST00000541953 C10orf142B7Z368 130 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 LATS1O95835 1130 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 SETSIPP0DME0 302 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 CD27P26842 260 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 CSKP41240 450 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 SLC8A3P57103 927 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 KCNJ12Q14500 433 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 SHBQ15464 509 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 TMEM270Q6UE05 265 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 LCLAT1Q6UWP7 414 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 GATAD2AQ86YP4 633 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 DHX40Q8IX18 779 aaKnown RBP16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 CFAP52Q8N1V2 620 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 ADAM32Q8TC27 787 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 FCRL2Q96LA5 508 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 DNAI2Q9GZS0 605 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 RSPH9Q9H1X1 276 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 PLA2G4CQ9UP65 541 aa16.07■□□□□ 0.16
CLSTN3-213ENST00000541953 KALRNO60229 2985 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 TRABD2BA6NFA1 517 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 FAM47DPA6NHR8 397 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 M0QYV0 167 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 MID1O15344 667 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 SLC16A3O15427 465 aaKnown RBP16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 ACSL4O60488 711 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 DNTTP04053 509 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 CCT8P50990 548 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 CYP4F3Q08477 520 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 ZNF776Q68DI1 518 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 DHRS13Q6UX07 377 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 MFN1Q8IWA4 741 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 SCML4Q8N228 414 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 DQX1Q8TE96 717 aaKnown RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms