RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SLC6A3Q01959 620 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 CDH18Q13634 790 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 TAF5Q15542 800 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 ZC3H12AQ5D1E8 599 aaKnown RBP11.98□□□□□ -0.49
RTN3-209ENST00000538995 TTC39BQ5VTQ0 682 aaPredicted RBP11.98□□□□□ -0.49
RTN3-209ENST00000538995 PEAR1Q5VY43 1037 aaPredicted RBP11.98□□□□□ -0.49
RTN3-209ENST00000538995 LYSMD4Q5XG99 296 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 OR6B2Q6IFH4 312 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 ADIPOR2Q86V24 386 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 CHSY1Q86X52 802 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 SYT12Q8IV01 421 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 DEFB106AQ8N104 65 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 ATP6V0D2Q8N8Y2 350 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 EPS8L1Q8TE68 723 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 DDX1Q92499 740 aaKnown RBP11.98□□□□□ -0.49
RTN3-209ENST00000538995 LMLNQ96KR4 655 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 VPS16Q9H269 839 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 PDCL3Q9H2J4 239 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 TMEM245Q9H330 911 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 DDIT4Q9NX09 232 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 USP36Q9P275 1121 aaKnown RBP11.98□□□□□ -0.49
RTN3-209ENST00000538995 LIMA1Q9UHB6 759 aaKnown RBP11.98□□□□□ -0.49
RTN3-209ENST00000538995 EVLQ9UI08 416 aaPredicted RBP11.98□□□□□ -0.49
RTN3-209ENST00000538995 PLA2G4CQ9UP65 541 aa11.98□□□□□ -0.49
RTN3-209ENST00000538995 LRRC10BA6NIK2 292 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 KCNU1A8MYU2 1149 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 F5H5T6 163 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 GDF9O60383 454 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 LUC7L3O95232 432 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 IGLV3-19P01714 112 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 ASLP04424 464 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 EPHX1P07099 455 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 POLR2EP19388 210 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 TACR2P21452 398 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 PRKCHP24723 683 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 CD70P32970 193 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 NOS2P35228 1153 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 MATKP42679 507 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 COPB1P53618 953 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 RPS24P62847 133 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 PITX1P78337 314 aaPredicted RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 RPL6Q02878 288 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 CAMK2GQ13555 558 aaPredicted RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 CCDC6Q16204 474 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 FNDC3BQ53EP0 1204 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 MBLAC2Q68D91 279 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 KIAA1324Q6UXG2 1013 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 RABEPKQ7Z6M1 372 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 KDM1BQ8NB78 822 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 WFDC5Q8TCV5 224 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 SORCS1Q8WY21 1168 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 TTC17Q96AE7 1141 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 C18orf8Q96DM3 657 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 MKRN2Q9H000 416 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 NAT10Q9H0A0 1025 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 PRDM16Q9HAZ2 1276 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 FAM207AQ9NSI2 230 aaPredicted RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 XPO7Q9UIA9 1087 aaKnown RBP11.97□□□□□ -0.49
RTN3-209ENST00000538995 STAP1Q9ULZ2 295 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 CYP8B1Q9UNU6 501 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 SIK3Q9Y2K2 1263 aa11.97□□□□□ -0.49
RTN3-209ENST00000538995 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 LNP1A1A4G5 178 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 KHNYNO15037 678 aaKnown RBP11.96□□□□□ -0.49
RTN3-209ENST00000538995 GRAP2O75791 330 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 MOCS3O95396 460 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 CD6P30203 668 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 SOX5P35711 763 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 PTGER3P43115 390 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 COPAP53621 1224 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 OXCT1P55809 520 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 JAM2P57087 298 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 POLR2FP61218 127 aaKnown RBP11.96□□□□□ -0.49
RTN3-209ENST00000538995 TYRO3Q06418 890 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 LMAN2Q12907 356 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 SLC12A1Q13621 1099 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 ARID5BQ14865 1188 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 PTPRNQ16849 979 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 RABGAP1LQ5R372 815 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 ACBD5Q5T8D3 534 aaPredicted RBP11.96□□□□□ -0.49
RTN3-209ENST00000538995 STPG1Q5TH74 334 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 RAP1GAP2Q684P5 730 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 IL31Q6EBC2 164 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 TCEAL6Q6IPX3 200 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 ARCQ7LC44 396 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 NOP9Q86U38 636 aaKnown RBP11.96□□□□□ -0.49
RTN3-209ENST00000538995 ERICH1Q86X53 443 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 TMPRSS6Q8IU80 811 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 TMEFF1Q8IYR6 380 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 LGI2Q8N0V4 545 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 FRMD1Q8N878 549 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 OR2T3Q8NH03 318 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 CEP76Q8TAP6 659 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 PIGKQ92643 395 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 PRCCQ92733 491 aaPredicted RBP11.96□□□□□ -0.49
RTN3-209ENST00000538995 FOXJ1Q92949 421 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 TCEAL3Q969E4 200 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 NT5C3BQ969T7 300 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 MYEOVQ96EZ4 313 aa11.96□□□□□ -0.49
RTN3-209ENST00000538995 PGAP3Q96FM1 320 aaPredicted RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms