RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ATP1A2P50993 1020 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 TNNC1P63316 161 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 SIM1P81133 766 aaPredicted RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 DUOXA1Q1HG43 343 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 MAP7D1Q3KQU3 841 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 TAF3Q5VWG9 929 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 LYSMD4Q5XG99 296 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 CRELD2Q6UXH1 353 aaPredicted RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 NOP9Q86U38 636 aaKnown RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 TTC30AQ86WT1 665 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 SPATA2LQ8IUW3 424 aaPredicted RBP8.6□□□□□ -1.03
NEDD8-207ENST00000533242 TMEFF1Q8IYR6 380 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 HDDC3Q8N4P3 179 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 TTC16Q8NEE8 873 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 CEP76Q8TAP6 659 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 HVCN1Q96D96 273 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 FNBP1Q96RU3 617 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 ISCUQ9H1K1 167 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 PILRBQ9UKJ0 227 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 SLC6A14Q9UN76 642 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 ATP8B3O60423 1300 aa8.6□□□□□ -1.03
NEDD8-207ENST00000533242 PCNX2A6NKB5 2137 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 A0A0A0MRY4 1105 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 LEFTY2O00292 366 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 SLC9A3R1O14745 358 aaPredicted RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 HSF2BPO75031 334 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 FTLP02792 175 aaPredicted RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 APODP05090 189 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 CYP17A1P05093 508 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 TNFAIP3P21580 790 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 ACAT1P24752 427 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 PDCLQ13371 301 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 NNTQ13423 1086 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 HLTFQ14527 1009 aaKnown RBP eCLIP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 ZNF423Q2M1K9 1284 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 UBAP2Q5T6F2 1119 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 ALS2CLQ60I27 953 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 STXBP4Q6ZWJ1 553 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 ARMCX6Q7L4S7 300 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 RABEPKQ7Z6M1 372 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 SRLQ86TD4 932 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 SLC47A2Q86VL8 602 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 OSTM1Q86WC4 334 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 SCN4BQ8IWT1 228 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 MREGQ8N565 214 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 ALLCQ8N6M5 410 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 LRRC52Q8N7C0 313 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 XXYLT1Q8NBI6 393 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 TXNDC5Q8NBS9 432 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 EPS8L1Q8TE68 723 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 RLN3Q8WXF3 142 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 CTNNBL1Q8WYA6 563 aaPredicted RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 CCDC127Q96BQ5 260 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 BTBD6Q96KE9 485 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 SPATA17Q96L03 361 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 ACCSQ96QU6 501 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 AGPAT1Q99943 283 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 TMEM74BQ9NUR3 256 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 GDAP2Q9NXN4 497 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 BCCIPQ9P287 314 aaKnown RBP eCLIP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 RSPH14Q9UHP6 348 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 GTF3C4Q9UKN8 822 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 AGAP1Q9UPQ3 857 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 PLAAQ9Y263 795 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 NFS1Q9Y697 457 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 MYOFQ9NZM1 2061 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 SGK1O00141 431 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 CYP26A1O43174 497 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 OPHN1O60890 802 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 CAPNS1P04632 268 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 PCSK1P29120 753 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 POLR2BP30876 1174 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 HSD17B3P37058 310 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 HSPA9P38646 679 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 USP8P40818 1118 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 PTGER3P43115 390 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 TNFRSF4P43489 277 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 LHX1P48742 406 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 WNT7BP56706 349 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 SLC7A9P82251 487 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 IFI16Q16666 785 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 CFAP58Q5T655 872 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 FAM171BQ6P995 826 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 SLC36A4Q6YBV0 504 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 C4orf50Q6ZRC1 276 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 INTS8Q75QN2 995 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 RAB44Q7Z6P3 723 aaPredicted RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 C12orf56Q8IXR9 622 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 TOP6BLQ8N6T0 577 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 IL17RCQ8NAC3 791 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 CALR3Q96L12 384 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 TRIM31Q9BZY9 425 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 DPH5Q9H2P9 285 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 NOCTQ9UK39 431 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 AMFRQ9UKV5 643 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 RRP15Q9Y3B9 282 aaKnown RBP8.59□□□□□ -1.03
NEDD8-207ENST00000533242 CEP295Q9C0D2 2601 aa8.59□□□□□ -1.03
NEDD8-207ENST00000533242 ATRXP46100 2492 aa8.59□□□□□ -1.04
NEDD8-207ENST00000533242 TCRBV7S2A1N4TA0A589 114 aa8.58□□□□□ -1.04
NEDD8-207ENST00000533242 ANKRD62A6NC57 917 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms