RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PPM1LQ5SGD2 360 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 CYP4A22Q5TCH4 519 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 BSPRYQ5W0U4 402 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 FAM183BPQ6ZVS7 135 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 SYCE1Q8N0S2 351 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 ELMOD1Q8N336 334 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 TTC9BQ8N6N2 239 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 EFHBQ8N7U6 833 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 NIPA2Q8N8Q9 360 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 EPS8L3Q8TE67 593 aaKnown RBP7.72□□□□□ -1.17
CD44-228ENST00000528455 GIPC2Q8TF65 315 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 CENPIQ92674 756 aaPredicted RBP7.72□□□□□ -1.17
CD44-228ENST00000528455 GOLGA1Q92805 767 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 SLITRK1Q96PX8 696 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 HHIPQ96QV1 700 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 CNPY3Q9BT09 278 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 DDX23Q9BUQ8 820 aaKnown RBP7.72□□□□□ -1.17
CD44-228ENST00000528455 NPHS2Q9NP85 383 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 OSGEPQ9NPF4 335 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.72□□□□□ -1.17
CD44-228ENST00000528455 TJP2Q9UDY2 1190 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 PRKAG3Q9UGI9 489 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 CD207Q9UJ71 328 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 TFR2Q9UP52 801 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 PAXBP1Q9Y5B6 917 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 PCDHGC5Q9Y5F6 944 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 ALG6Q9Y672 507 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 PATJQ8NI35 1801 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 DENND4CQ5VZ89 1909 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 C5orf42Q9H799 3197 aa7.71□□□□□ -1.17
CD44-228ENST00000528455 A0A0U1RQJ8 604 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 CCDC195A0A1B0GUA6 201 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 MACROD2A1Z1Q3 448 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 USP27XA6NNY8 438 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 GOLGA8SH3BPF8 625 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 KIF2AO00139 706 aaPredicted RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 PIK3R2O00459 728 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 ZNF197O14709 1029 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 CAPN9O14815 690 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 LINC01565O15544 149 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 BUB1O43683 1085 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 SOAT2O75908 522 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 RNF8O76064 485 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 FYNP06241 537 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 SRGAP2BP0DMP2 458 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 RALAP11233 206 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 NID1P14543 1247 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 PRLRP16471 622 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 HOXB8P17481 243 aaPredicted RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 GBP1P32455 592 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 MAN1A1P33908 653 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 PTPN9P43378 593 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 GPR15P49685 360 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 KPNA1P52294 538 aaPredicted RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 EPHA5P54756 1037 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 RNASE9P60153 205 aaKnown RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 YWHAGP61981 247 aaKnown RBP eCLIP7.71□□□□□ -1.18
CD44-228ENST00000528455 ETF1P62495 437 aaKnown RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 DLX2Q07687 328 aaPredicted RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 TAF10Q12962 218 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 TAF5Q15542 800 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 CLUL1Q15846 466 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 SLC25A52Q3SY17 297 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 DCAF6Q58WW2 860 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 FAM102AQ5T9C2 384 aaPredicted RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 SDHAF4Q5VUM1 108 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 BTBD8Q5XKL5 378 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 KLHDC10Q6PID8 442 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 ADAMTSL4Q6UY14 1074 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 STRADAQ7RTN6 431 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 BHLHA9Q7RTU4 235 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 GPRIN1Q7Z2K8 1008 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 ADGRD2Q7Z7M1 963 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 SCD5Q86SK9 330 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 PHLDB2Q86SQ0 1253 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 LEMD2Q8NC56 503 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 STKLD1Q8NE28 680 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 CMASQ8NFW8 434 aaPredicted RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 SLC7A14Q8TBB6 771 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 ZNF564Q8TBZ8 553 aaPredicted RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 RXFP2Q8WXD0 754 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 ATRIPQ8WXE1 791 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 CASP10Q92851 521 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 FBXO32Q969P5 355 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 PGAP3Q96FM1 320 aaPredicted RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 SLC2A13Q96QE2 648 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 CDK5RAP1Q96SZ6 601 aaKnown RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 NPY6RQ99463 290 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 C1QTNF1Q9BXJ1 281 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 LRRC3Q9BY71 257 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 OLA1Q9NTK5 396 aaKnown RBP7.71□□□□□ -1.18
CD44-228ENST00000528455 TRPM5Q9NZQ8 1165 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 ZMYM5Q9UJ78 669 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 ANAPC7Q9UJX3 599 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 TRIM33Q9UPN9 1127 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 JRKLQ9Y4A0 524 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 YIPF1Q9Y548 306 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 HCFC2Q9Y5Z7 792 aa7.71□□□□□ -1.18
CD44-228ENST00000528455 ATG2AQ2TAZ0 1938 aa7.7□□□□□ -1.18
CD44-228ENST00000528455 ANAPC1Q9H1A4 1944 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms