RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CTNNA3Q9UI47 895 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNOT7Q9UIV1 285 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MOSPD1Q9UJG1 213 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBD1Q9UJT1 453 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS6KA6Q9UK32 745 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FEM1BQ9UK73 627 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BLOC1S6Q9UL45 172 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF215Q9UL58 517 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NAP1L2Q9ULW6 460 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CA14Q9ULX7 337 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBX20Q9UMR3 447 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 USP18Q9UMW8 372 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGAP26Q9UNA1 814 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EDARQ9UNE0 448 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DUSP12Q9UNI6 340 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 WASF3Q9UPY6 502 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAN2B2Q9Y2E5 1009 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MED16Q9Y2X0 877 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DERAQ9Y315 318 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RRP15Q9Y3B9 282 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF711Q9Y462 761 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTF2Q9Y483 593 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF3AQ9Y496 699 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 USP15Q9Y4E8 981 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DTNAQ9Y4J8 743 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCL27Q9Y4X3 112 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ENTPD2Q9Y5L3 495 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZFP37Q9Y6Q3 630 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPAG9O60271 1321 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF521Q96K83 1311 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF335Q9H4Z2 1342 aaPredicted RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 COL15A1P39059 1388 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 IGKV2D-30A0A075B6S6 120 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GOLGA6L10A0A0M3HER8 536 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1B0GTW7 788 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC195A0A1B0GUA6 201 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM234BA2RU67 622 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRD1A4D1F6 860 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 VWA3AA6NCI4 1184 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM43BA6NCK2 446 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MBD3L4A6NDZ8 208 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MBD3L3A6NE82 208 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GAGE10A6NGK3 116 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 AQP7P3A6NL99 342 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 AQP12BA6NM10 295 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM110-MUSTN1A8MSY1 372 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 AGAP14A8MT82 685 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP29-1A8MX34 341 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LACTBL1A8MY62 500 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM25EA8MYX2 175 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYO1GB0I1T2 1018 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 BTBD19C9JJ37 291 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM232C9JQI7 657 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 E7EVH7 732 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 F5H697 171 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PYCARD-AS1I3L0S3 204 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDX39AO00148 427 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACOT7O00154 380 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TAF4O00268 1085 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ELL2O00472 640 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMD14O00487 310 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MPHOSPH10O00566 681 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP6CO00743 305 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 UBE2CO00762 179 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH2B2O14492 632 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FCHO1O14526 889 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNK3O14649 394 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACOT8O14734 319 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPEF2O14830 753 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CASQ2O14958 399 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIP5K1BO14986 540 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLSCR1O15162 318 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 VILLO15195 856 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPTLC2O15270 562 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 IPO8O15397 1037 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ASAP2O43150 1006 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEPT4O43236 478 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC7A4O43246 635 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCP110O43303 1012 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TXNL1O43396 289 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ASNA1O43681 348 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 STX6O43752 255 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBTB14O43829 449 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF1CO43896 1103 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRPSAP2O60256 369 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYNCRIPO60506 623 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 EXOC3O60645 756 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FMO6PO60774 539 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NOL3O60936 208 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KERAO60938 352 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRGAP2O75044 1071 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 COQ9O75208 318 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBX10O75333 385 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEC22BO75396 215 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GCATO75600 419 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC22A3O75751 556 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIAS2O75928 621 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NCR1O76036 304 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACTL6BO94805 426 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDH8O95206 1070 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms