RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	RAPGEF5	Q92565	580 aa		13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	ALG3	Q92685	438 aa		13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	TRIM44	Q96DX7	344 aa	Predicted RBP	13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	OSBPL2	Q9H1P3	480 aa		13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	DHX35	Q9H5Z1	703 aa	Known RBP	13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	SPHK2	Q9NRA0	654 aa		13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	TBC1D14	Q9P2M4	693 aa		13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	OR12D3	Q9UGF7	316 aa		13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	CLEC4E	Q9ULY5	219 aa		13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	ZNF510	Q9Y2H8	683 aa		13.95	□□□□□ -0.18
PTPN7-218	ENST00000496197	C3orf70	A6NLC5	250 aa	Predicted RBP	13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197		E9PAM4	449 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	PI4K2B	G5E9Z4	385 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	DDX3Y	O15523	660 aa	Known RBP	13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	SRGAP2	O75044	1071 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	CNTN5	O94779	1100 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	LRIG2	O94898	1065 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	CTNNA1	P35221	906 aa	Known RBP	13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	SOX9	P48436	509 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	AIF1	P55008	147 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	MMRN1	Q13201	1228 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	DHCR24	Q15392	516 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	DPYSL2	Q16555	572 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	IFI16	Q16666	785 aa	Known RBP	13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	ARL13B	Q3SXY8	428 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	ALF	Q53S48	1182 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	EFHC2	Q5JST6	749 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	C12orf40	Q86WS4	652 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	RNF135	Q8IUD6	432 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	RHOT1	Q8IXI2	618 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	YAF2	Q8IY57	180 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	SLC35F6	Q8N357	371 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	KIAA1958	Q8N8K9	716 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	WFDC5	Q8TCV5	224 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	TEKT4	Q8WW24	435 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	CALR3	Q96L12	384 aa	Known RBP	13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	C1orf74	Q96LT6	269 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	ECT2	Q9H8V3	914 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	PCDH18	Q9HCL0	1135 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	THG1L	Q9NWX6	298 aa	Known RBP	13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	MPP6	Q9NZW5	540 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	SLC12A6	Q9UHW9	1150 aa		13.94	□□□□□ -0.18
PTPN7-218	ENST00000496197	IGLV3-10	A0A075B6K4	115 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	CREB3	O43889	395 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	GOT1	P17174	413 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	IL4R	P24394	825 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	CTNNA2	P26232	953 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	HOXD9	P28356	352 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	PEX5	P50542	639 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	MESP2	Q0VG99	397 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	TDG	Q13569	410 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	RUNX3	Q13761	415 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	HADH	Q16836	314 aa	Known RBP	13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	C5orf22	Q49AR2	442 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	BOLA3	Q53S33	107 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	PPP6R3	Q5H9R7	873 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	MEI1	Q5TIA1	1274 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	DCAF12L1	Q5VU92	463 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	AADACL2	Q6P093	401 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	PEX26	Q7Z412	305 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	POLN	Q7Z5Q5	900 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	FAM71B	Q8TC56	605 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	TSC1	Q92574	1164 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	IRF7	Q92985	503 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	NXPE3	Q969Y0	559 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	OTUB2	Q96DC9	234 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	HES6	Q96HZ4	224 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	NCAPG	Q9BPX3	1015 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	BRD9	Q9H8M2	597 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	NDFIP2	Q9NV92	336 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	CWC15	Q9P013	229 aa	Known RBP	13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	ZNF212	Q9UDV6	495 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	AMFR	Q9UKV5	643 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	MFHAS1	Q9Y4C4	1052 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	SHISA7	A6NL88	538 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	NEDD8-MDP1	E9PL57	170 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197		F5H5T6	163 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	SLC9A3R1	O14745	358 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	TRIM24	O15164	1050 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	PSTPIP1	O43586	416 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	TBL1X	O60907	577 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	PENK	P01210	267 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	CHKA	P35790	457 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	DNA2	P51530	1060 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	CDH6	P55285	790 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	NRG1	Q02297	640 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	DPYSL3	Q14195	570 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	PDGFRL	Q15198	375 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	TJAP1	Q5JTD0	557 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	ZNF569	Q5MCW4	686 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	LRRC38	Q5VT99	294 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	SYCE1	Q8N0S2	351 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	TRIM58	Q8NG06	486 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	OR52K2	Q8NGK3	314 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	ATP2A3	Q93084	1043 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	RPRD1A	Q96P16	312 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	WDR24	Q96S15	920 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	HERPUD2	Q9BSE4	406 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	TLR10	Q9BXR5	811 aa		13.93	□□□□□ -0.18
PTPN7-218	ENST00000496197	HEBP1	Q9NRV9	189 aa		13.93	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms