RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 CHADO15335 359 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 FGF10O15520 208 aaPredicted RBP14.34□□□□□ -0.11
C9orf3-221ENST00000489562 ZNF500O60304 480 aaPredicted RBP14.34□□□□□ -0.11
C9orf3-221ENST00000489562 LRIG2O94898 1065 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 CYBBP04839 570 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 IL9P15248 144 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 SP100P23497 879 aaPredicted RBP14.34□□□□□ -0.11
C9orf3-221ENST00000489562 HOXC13P31276 330 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 CASQ1P31415 396 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 MARCKSL1P49006 195 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 ARSEP51690 589 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 TPI1P60174 286 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 PPP2R5EQ16537 467 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 CA9Q16790 459 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 C5orf22Q49AR2 442 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 ATP13A4Q4VNC1 1196 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 MPP7Q5T2T1 576 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 MANEALQ5VSG8 457 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 FBXL22Q6P050 247 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 PARM1Q6UWI2 310 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 LGI2Q8N0V4 545 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 HJURPQ8NCD3 748 aaPredicted RBP14.34□□□□□ -0.11
C9orf3-221ENST00000489562 RIN3Q8TB24 985 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 ATXN2LQ8WWM7 1075 aaKnown RBP14.34□□□□□ -0.11
C9orf3-221ENST00000489562 ALG3Q92685 438 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 FGF14Q92915 247 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 ATP2A3Q93084 1043 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 TBC1D31Q96DN5 1066 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 RPGRIP1Q96KN7 1286 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 KXD1Q9BQD3 176 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 CALN1Q9BXU9 219 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 CATSPERBQ9H7T0 1116 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 PRDM6Q9NQX0 595 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 STIM2Q9P246 746 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 DNAI1Q9UI46 699 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 EFR3BQ9Y2G0 817 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 NUMBLQ9Y6R0 609 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 CHD5Q8TDI0 1954 aa14.34□□□□□ -0.11
C9orf3-221ENST00000489562 NUP205Q92621 2012 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 GFRA2O00451 464 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 CES2O00748 559 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 ENC1O14682 589 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 CREB3O43889 395 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 NFATC1O95644 943 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 ATP1A1P05023 1023 aaKnown RBP14.33□□□□□ -0.12
C9orf3-221ENST00000489562 PRLRP16471 622 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 TCP1P17987 556 aaKnown RBP14.33□□□□□ -0.12
C9orf3-221ENST00000489562 SLC6A4P31645 630 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 PTPN7P35236 360 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 DPYSL3Q14195 570 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 MPPE1Q53F39 396 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 TFDP3Q5H9I0 405 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 SEL1L2Q5TEA6 688 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 SYT10Q6XYQ8 523 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 CCDC50Q8IVM0 306 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 ADHFE1Q8IWW8 467 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 ZNF683Q8IZ20 524 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 PYROXD2Q8N2H3 581 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 RAPGEF5Q92565 580 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 TSC1Q92574 1164 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 FAF2Q96CS3 445 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 PBKQ96KB5 322 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 RPRD1AQ96P16 312 aaPredicted RBP14.33□□□□□ -0.12
C9orf3-221ENST00000489562 LRRC3BQ96PB8 259 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 FAM83CQ9BQN1 747 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 TRMT61BQ9BVS5 477 aaKnown RBP14.33□□□□□ -0.12
C9orf3-221ENST00000489562 ZYG11BQ9C0D3 744 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 KLHL11Q9NVR0 708 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 MARK1Q9P0L2 795 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 VANGL2Q9ULK5 521 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 SNX12Q9UMY4 172 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 WNT6Q9Y6F9 365 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 TICRRQ7Z2Z1 1910 aa14.33□□□□□ -0.12
C9orf3-221ENST00000489562 GOLGA6L7A0A1B0GV03 622 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 C3orf70A6NLC5 250 aaPredicted RBP14.32□□□□□ -0.12
C9orf3-221ENST00000489562 DRGXA6NNA5 263 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 LOC730098B7Z3J9 87 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 FAM72CH0Y354 149 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 KCNK3O14649 394 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 DAPK3O43293 454 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 SRGAP2O75044 1071 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 ADH1CP00326 375 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 GOT1P17174 413 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 EPHB2P29323 1055 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 GGCXP38435 758 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 DNA2P51530 1060 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 TFDP2Q14188 446 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 TAZQ16635 292 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 EML3Q32P44 896 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 FAM72AQ5TYM5 149 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 PAPD7Q5XG87 772 aaKnown RBP14.32□□□□□ -0.12
C9orf3-221ENST00000489562 FAM72DQ6L9T8 149 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 RFWD3Q6PCD5 774 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 SPOCD1Q6ZMY3 1216 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 RFX8Q6ZV50 586 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 CHST9Q7L1S5 443 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 FAM72BQ86X60 149 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 ADGRG2Q8IZP9 1017 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 ZNF557Q8N988 423 aaPredicted RBP14.32□□□□□ -0.12
C9orf3-221ENST00000489562 IRF7Q92985 503 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms