RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 MAMDC2Q7Z304 686 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-233ENST00000489352 SYT2Q8N9I0 419 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-233ENST00000489352 WDR48Q8TAF3 677 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 C9orf43Q8TAL5 461 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-233ENST00000489352 WFIKKN2Q8TEU8 576 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 NOC3LQ8WTT2 800 aaKnown RBP12.07□□□□□ -0.48
HDAC6-233ENST00000489352 ANKRD36BP1Q96IX9 119 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 FAM213AQ9BRX8 229 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 B3GNT5Q9BYG0 378 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 DCLK3Q9C098 648 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 RSPH9Q9H1X1 276 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-233ENST00000489352 DMAP1Q9NPF5 467 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-233ENST00000489352 TMEM30AQ9NV96 361 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 SERGEFQ9UGK8 458 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 COL27A1Q8IZC6 1860 aaPredicted RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 SPENQ96T58 3664 aaKnown RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 KRT7P08729 469 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 JMJD7P0C870 316 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 C7P10643 843 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 MAT2AP31153 395 aaKnown RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 NUDT1P36639 197 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 EIF3IQ13347 325 aaKnown RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 GNL2Q13823 731 aaKnown RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 SPIDRQ14159 915 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 CST6Q15828 149 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 KMT5BQ4FZB7 885 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 CRTC1Q6UUV9 634 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 CRELD2Q6UXH1 353 aaPredicted RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 CHST9Q7L1S5 443 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 RAB11FIP2Q7L804 512 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 KCNK18Q7Z418 384 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 TADA2BQ86TJ2 420 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 HEATR4Q86WZ0 1026 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 RBBP8NLQ8NC74 664 aaPredicted RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 HTR3CQ8WXA8 447 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 KCNN1Q92952 543 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 CDK5RAP3Q96JB5 506 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 MTMR12Q9C0I1 747 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 STRADBQ9C0K7 418 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 PARVGQ9HBI0 331 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 EPB41L5Q9HCM4 733 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 CUEDC1Q9NWM3 386 aaPredicted RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 RBAKQ9NYW8 714 aaPredicted RBP12.06□□□□□ -0.48
HDAC6-233ENST00000489352 ODF2LQ9ULJ1 636 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 FBN3Q75N90 2809 aa12.06□□□□□ -0.48
HDAC6-233ENST00000489352 CELSR1Q9NYQ6 3014 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 SLC12A8A0AV02 714 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 PP2D1A8MPX8 630 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 A8MXQ7 604 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 TISP43B9A030 160 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 RIOK3O14730 519 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 SCAMP1O15126 338 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 CDC45O75419 566 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 PIAS2O75928 621 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 STC2O76061 302 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 PRPF6O94906 941 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 LDHAP00338 332 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 TNNC2P02585 160 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 KRT18P05783 430 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 HMBSP08397 361 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 DLDP09622 509 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 POLR2EP19388 210 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 GRNP28799 593 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 SLC8A1P32418 973 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 COG7P83436 770 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 PDE4CQ08493 712 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 KCNMA1Q12791 1236 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 TTC38Q5R3I4 469 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 ZCCHC8Q6NZY4 707 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 MMAAQ8IVH4 418 aaKnown RBP12.05□□□□□ -0.48
HDAC6-233ENST00000489352 EFCAB3Q8N7B9 438 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 IGSF22Q8N9C0 903 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 B3GALNT2Q8NCR0 500 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 KLHL11Q9NVR0 708 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 IL37Q9NZH6 218 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 NUDT5Q9UKK9 219 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 ACSL6Q9UKU0 697 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 CLEC4EQ9ULY5 219 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 DMTF1Q9Y222 760 aa12.05□□□□□ -0.48
HDAC6-233ENST00000489352 PCNX1Q96RV3 2341 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 ESPL1Q14674 2120 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 PDZD2O15018 2839 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 ADGRG4Q8IZF6 3080 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 PRAMEF26H0Y7S4 382 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 TMX2-CTNND1H3BSU7 103 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 K7ESM1 405 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 MDM4O15151 490 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 NVLO15381 856 aaKnown RBP12.04□□□□□ -0.48
HDAC6-233ENST00000489352 DDAH2O95865 285 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 PLA2G4BP0C869 781 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 RARGP13631 454 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 GOT1P17174 413 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 CORO1AP31146 461 aaKnown RBP12.04□□□□□ -0.48
HDAC6-233ENST00000489352 UGT1A5P35504 534 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 MLLT10P55197 1068 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 GTF2BQ00403 316 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 EHHADHQ08426 723 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 POM121L1PQ3SYA9 428 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 GUSBP11Q6P575 273 aa12.04□□□□□ -0.48
HDAC6-233ENST00000489352 AHI1Q8N157 1196 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms