RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 GDF9O60383 454 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 DAB1O75553 588 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 SLC2A3P11169 496 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 KLK7P49862 253 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 MTA1Q13330 715 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 SF3A2Q15428 464 aaKnown RBP22.54■■□□□ 1.2
COL9A3-211ENST00000477612 CCDC6Q16204 474 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 ANKRD20A12PQ8NF67 263 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 SORCS1Q8WY21 1168 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 PRMT1Q99873 361 aaKnown RBP22.54■■□□□ 1.2
COL9A3-211ENST00000477612 PDCL3Q9H2J4 239 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 RRN3Q9NYV6 651 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 SLC12A6Q9UHW9 1150 aa22.54■■□□□ 1.2
COL9A3-211ENST00000477612 LOC105378220A0A1B0GUY1 285 aaPredicted RBP22.53■■□□□ 1.2
COL9A3-211ENST00000477612 LGALS16A8MUM7 142 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 MAP3K13O43283 966 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 LSM8O95777 96 aaKnown RBP22.53■■□□□ 1.2
COL9A3-211ENST00000477612 TACR2P21452 398 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 CCR1P32246 355 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 CD70P32970 193 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 RPS24P62847 133 aaKnown RBP22.53■■□□□ 1.2
COL9A3-211ENST00000477612 TYRO3Q06418 890 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 PTPRNQ16849 979 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 MBLAC2Q68D91 279 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 DGLUCYQ7Z3D6 616 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 MFN1Q8IWA4 741 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 C12orf50Q8NA57 414 aaPredicted RBP22.53■■□□□ 1.2
COL9A3-211ENST00000477612 NT5C3BQ969T7 300 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 TTC17Q96AE7 1141 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 C18orf8Q96DM3 657 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 ERGIC2Q96RQ1 377 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 NPY6RQ99463 290 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 BPIFA3Q9BQP9 254 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 MKRN2Q9H000 416 aaKnown RBP22.53■■□□□ 1.2
COL9A3-211ENST00000477612 SYNCQ9H7C4 482 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 DDIT4Q9NX09 232 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 PLA2G4CQ9UP65 541 aa22.53■■□□□ 1.2
COL9A3-211ENST00000477612 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 EPHB6O15197 1021 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 AP5Z1O43299 807 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 GRAP2O75791 330 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 MOCS2O96007 188 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 ATP5BP06576 529 aaKnown RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 MMEP08473 750 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 DLDP09622 509 aaKnown RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 PRKCHP24723 683 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 SOX5P35711 763 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 DPP6P42658 865 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 MATKP42679 507 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 DHPSP49366 369 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 COPAP53621 1224 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 POLR2FP61218 127 aaKnown RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 ARID5AQ03989 594 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 CAMK2GQ13555 558 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 PEAR1Q5VY43 1037 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 SERPINA13PQ6UXR4 307 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 CYP2U1Q7Z449 544 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 ERICH1Q86X53 443 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 TMEFF1Q8IYR6 380 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 PGAP3Q96FM1 320 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 FAM204AQ9H8W3 233 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 PRDM16Q9HAZ2 1276 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 ITM2CQ9NQX7 267 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 RXFP3Q9NSD7 469 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 FAM207AQ9NSI2 230 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 TMEM51Q9NW97 253 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 STIM2Q9P246 746 aa22.52■■□□□ 1.2
COL9A3-211ENST00000477612 USP36Q9P275 1121 aaKnown RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 NOCTQ9UK39 431 aaKnown RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 INTS6Q9UL03 887 aaKnown RBP22.52■■□□□ 1.2
COL9A3-211ENST00000477612 SYNCRIPO60506 623 aaKnown RBP22.51■■□□□ 1.19
COL9A3-211ENST00000477612 LUC7L3O95232 432 aaKnown RBP22.51■■□□□ 1.19
COL9A3-211ENST00000477612 POLR2EP19388 210 aaKnown RBP22.51■■□□□ 1.19
COL9A3-211ENST00000477612 NOMO3P69849 1222 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 LMAN2Q12907 356 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 SYCP1Q15431 976 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 AASDHQ4L235 1098 aaPredicted RBP22.51■■□□□ 1.19
COL9A3-211ENST00000477612 TAF3Q5VWG9 929 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 RAP1GAP2Q684P5 730 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 ARCQ7LC44 396 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 XYLT1Q86Y38 959 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 TMPRSS6Q8IU80 811 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 LGI2Q8N0V4 545 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 SLC6A17Q9H1V8 727 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 SMOC1Q9H4F8 434 aa22.51■■□□□ 1.19
COL9A3-211ENST00000477612 DOCK4Q8N1I0 1966 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 GFPT2O94808 682 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 IGLV3-19P01714 112 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 CYP1A1P04798 512 aaPredicted RBP22.5■■□□□ 1.19
COL9A3-211ENST00000477612 EPHX1P07099 455 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 CDK11BP21127 795 aaKnown RBP22.5■■□□□ 1.19
COL9A3-211ENST00000477612 ABCB4P21439 1286 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 PTGER3P43115 390 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 FSCBQ5H9T9 825 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 OTUD1Q5VV17 481 aaPredicted RBP22.5■■□□□ 1.19
COL9A3-211ENST00000477612 CHSY1Q86X52 802 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 SYT12Q8IV01 421 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 CFAP52Q8N1V2 620 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 KDM1BQ8NB78 822 aa22.5■■□□□ 1.19
COL9A3-211ENST00000477612 CYB5D2Q8WUJ1 264 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms